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A

ABORT - Static variable in class whistleClassifier.training.ClassifierTrainingProgress
 
ABORTED - Static variable in class beakedWhaleProtocol.BeakedExperimentData
 
ABOVE_LEFT - Static variable in class Layout.PamAxis
 
absAngle(PamVector) - Method in class pamMaths.PamVector
Calculates the smallest angle between two vectors (0 <= angle < pi/2);
absElements() - Method in class pamMaths.PamVector
Make all elements within the vector positive.
absMillisecondsToSamples(long) - Method in class PamguardMVC.PamProcess
Convert a time in milli seconds to a number of samples.
absolute(int) - Method in class generalDatabase.pamCursor.NonScrollablePamCursor
 
absolute(int) - Method in class generalDatabase.pamCursor.PamCursor
Go t0 an absolute row number
absolute(int) - Method in class generalDatabase.pamCursor.ScrollablePamCursor
 
absSamplesToMilliseconds(long) - Method in class PamguardMVC.PamProcess
Convert am ADC sample number to a millisecond time.
AbstractCellEditor - Class in likelihoodDetectionModule
The class AbstractCellEditor serves as the base class for the TreeTable's table cell editor.
AbstractCellEditor() - Constructor for class likelihoodDetectionModule.AbstractCellEditor
 
AbstractControlPanel - Class in targetMotionModule.panels
 
AbstractControlPanel(TargetMotionControl) - Constructor for class targetMotionModule.panels.AbstractControlPanel
 
AbstractDetectionMatch - Class in PamDetection
This class aims to match detections picked up on different hydrophones, primarily on WIDE APERTURE arrays.
AbstractDetectionMatch(PamDataUnit) - Constructor for class PamDetection.AbstractDetectionMatch
 
AbstractDetectionMatch(PamDataUnit, Integer) - Constructor for class PamDetection.AbstractDetectionMatch
 
AbstractFilter - Class in Filters
Abstract implementation of Filter interface to provide common functionality for two of the main function calls for processing arrays of data.
AbstractFilter() - Constructor for class Filters.AbstractFilter
 
AbstractLocalisation - Class in PamDetection
Class for localisation information.
AbstractLocalisation(PamDataUnit, int, int) - Constructor for class PamDetection.AbstractLocalisation
 
AbstractLocalisation(PamDataUnit, int, int, int, PamVector[]) - Constructor for class PamDetection.AbstractLocalisation
 
AbstractLocaliser<T extends PamDataUnit> - Class in Localiser.bearingLocaliser
Abstract Localiser class.
AbstractLocaliser(PamDataBlock<T>) - Constructor for class Localiser.bearingLocaliser.AbstractLocaliser
 
AbstractLocaliserControl - Class in staticLocaliser.panels
The basic control panel for changing the pamdetection on the control panel.
AbstractLocaliserControl() - Constructor for class staticLocaliser.panels.AbstractLocaliserControl
 
AbstractPamScroller - Class in pamScrollSystem
 
AbstractPamScroller(String, int, int, long, boolean) - Constructor for class pamScrollSystem.AbstractPamScroller
 
AbstractPamScrollerAWT - Class in pamScrollSystem
 
AbstractPamScrollerAWT(String, int, int, long, boolean) - Constructor for class pamScrollSystem.AbstractPamScrollerAWT
 
AbstractScrollManager - Class in pamScrollSystem
 
AbstractSLAlgorithm - Class in staticLocaliser.algorithms
This is the abstract class for building an algorithm for the static localiser.
AbstractSLAlgorithm(StaticLocalise) - Constructor for class staticLocaliser.algorithms.AbstractSLAlgorithm
 
AbstractTargetMotionInformation - Class in targetMotionModule
 
AbstractTargetMotionInformation(ArrayList<PamDetection>, PamDataBlock) - Constructor for class targetMotionModule.AbstractTargetMotionInformation
 
AbstractTargetMotionModel - Class in targetMotionModule.algorithms
 
AbstractTargetMotionModel() - Constructor for class targetMotionModule.algorithms.AbstractTargetMotionModel
 
AbstractTargetMotionModel<T extends PamDetection> - Class in targetMotionOld
Reinstated Target motion add-in as used by the click detector.
AbstractTargetMotionModel() - Constructor for class targetMotionOld.AbstractTargetMotionModel
 
AbstractTDZoomable - Class in dataPlots.mouse
 
AbstractTDZoomable() - Constructor for class dataPlots.mouse.AbstractTDZoomable
 
AbstractTimeDelayLocaliser<T extends PamDetection> - Class in targetMotionOld
Reinstated Target motion add-in as used by the click detector.
AbstractTimeDelayLocaliser() - Constructor for class targetMotionOld.AbstractTimeDelayLocaliser
 
AbstractVRMethod - Class in videoRangePanel.vrmethods
AbstractVRMethod provides a significant amount of the basic functionality required to determine the range of an animal from an image.
AbstractVRMethod(VRControl) - Constructor for class videoRangePanel.vrmethods.AbstractVRMethod
 
AbstractWekaClassifier - Class in classifier
 
AbstractWekaClassifier() - Constructor for class classifier.AbstractWekaClassifier
 
AbstractWhistleDataBlock<T extends AbstractWhistleDataUnit> - Class in whistlesAndMoans
 
AbstractWhistleDataBlock(Class, String, PamProcess, int) - Constructor for class whistlesAndMoans.AbstractWhistleDataBlock
 
AbstractWhistleDataUnit - Class in whistlesAndMoans
 
AbstractWhistleDataUnit(long, int, long, long) - Constructor for class whistlesAndMoans.AbstractWhistleDataUnit
 
accept(File) - Method in class clickDetector.dialogs.ClickAlarmDialog.SoundFilter
 
accept(File) - Method in class Map.MapFileFilter
 
accept(File) - Method in class PamUtils.PamFileFilter
 
accept(File) - Method in class videoRangePanel.ImageFileFilter
 
accepted - Variable in class likelihoodDetectionModule.LikelihoodDetectionParametersDialog
The accepted state of the dialog (i.e., whether OK has been selected).
AcceptMeasurementDialog - Class in videoRangePanel.panels
 
ackOk(int) - Method in class smlPingerControl.SMLPingerProcess
Check the ack state.
ackOutOfDate - Variable in class whistleDetector.WhistleParameters
Acknowledge that this unit is out of date.
acosh(double) - Static method in class Filters.ChebyWindow
Calculate acosh function.
AcousticDataBlock<Tunit extends AcousticDataUnit> - Class in PamguardMVC
Class for all PAMGAURD data based on acoustic types of data, i.e.
AcousticDataBlock(Class, String, PamProcess, int) - Constructor for class PamguardMVC.AcousticDataBlock
 
AcousticDataUnit - Class in PamDetection
Basic class for all acoustic data, everything from raw audio data to final detections with localisations
AcousticDataUnit(long, int, long, long) - Constructor for class PamDetection.AcousticDataUnit
 
AcousticSQLLogging - Class in PamDetection
 
AcquireNmeaData - Class in NMEA
 
Acquisition - package Acquisition
 
Acquisition.offlineFuncs - package Acquisition.offlineFuncs
 
Acquisition.pamAudio - package Acquisition.pamAudio
 
Acquisition.rona - package Acquisition.rona
 
AcquisitionControl - Class in Acquisition
Main data acquisition control to get audio data from sound cards, NI cards (via UDP), files, directories of files, etc.
AcquisitionControl(String) - Constructor for class Acquisition.AcquisitionControl
Main control unit for audio data acquisition.
AcquisitionControl(String, boolean) - Constructor for class Acquisition.AcquisitionControl
 
AcquisitionCParameters - Class in Acquisition
Very simplified version of the Acquisition parameters to be passed over the JNI to the C backend.
AcquisitionCParameters() - Constructor for class Acquisition.AcquisitionCParameters
 
AcquisitionDialog - Class in Acquisition
Main dialog for acquisition control.
AcquisitionLogging - Class in Acquisition
Very simple concrete implementation of SQLLogging to log the starts and stops of PAMGUARD in the database.
AcquisitionLogging(PamDataBlock, AcquisitionControl) - Constructor for class Acquisition.AcquisitionLogging
 
acquisitionModule - Variable in class smlGainControl.SMLGainParameters
DAQ module this gain control is applying itself to
acquisitionParameters - Variable in class Acquisition.AcquisitionControl
 
AcquisitionParameters - Class in Acquisition
 
AcquisitionParameters() - Constructor for class Acquisition.AcquisitionParameters
 
AcquisitionProcess - Class in Acquisition
Data acquisition process for all types of input device.
AcquisitionSettings - Class in likelihoodDetectionModule
The AcquisitionSettings class provides a module-local storage object for holding on to the properties of the audio data source (acquisition module) upon which the module is depending.
AcquisitionSettings() - Constructor for class likelihoodDetectionModule.AcquisitionSettings
Instantiates a new acquisition settings.
acquisitionStopped() - Method in class Acquisition.AcquisitionProcess
 
actionPerformed(ActionEvent) - Method in class Acquisition.FileInputSystem
 
actionPerformed(ActionEvent) - Method in class AIS.AISDisplayDialog
 
actionPerformed(ActionEvent) - Method in class Array.ArrayDialog
 
actionPerformed(ActionEvent) - Method in class Array.ChannelPanel
 
actionPerformed(ActionEvent) - Method in class Array.HydrophoneDialogPanel
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickBTDisplay.FollowBoxListener
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickClassifiers.basic.ClickTypeDialog
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickClassifiers.ClickTypesDialog
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickSidePanel.SidePanel
Cycle through all available alarms, playing each one
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.ArrangeWindows
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.MapOptions
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.OverlayOptions
 
actionPerformed(ActionEvent) - Method in class clickDetector.ClickToolBar
 
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickAlarmDialog
ActionListener events for the GUI components
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickDisplayDialog
 
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickStorageOptionsDialog
 
actionPerformed(ActionEvent) - Method in class clickDetector.IDI_DisplayDialog
Starts the open file dialog
actionPerformed(ActionEvent) - Method in class dataPlots.HidingControlPanel.RemoveAGraph
 
actionPerformed(ActionEvent) - Method in class difar.display.DifarClipDecorations.EditSpeciesList
 
actionPerformed(ActionEvent) - Method in class difar.display.DifarClipDecorationsOld1575.EditSpeciesList
 
actionPerformed(ActionEvent) - Method in class fftManager.FFTPluginParamsDialog
 
actionPerformed(ActionEvent) - Method in class Filters.FilterDialogPanel
 
actionPerformed(ActionEvent) - Method in class generalDatabase.dataExport.ValueFilterDialog
 
actionPerformed(ActionEvent) - Method in class GPS.ShipDimensionsFields
 
actionPerformed(ActionEvent) - Method in class GPS.UpdateClockDialog
 
actionPerformed(ActionEvent) - Method in class ishmaelComms.ProcessIshmaelData
 
actionPerformed(ActionEvent) - Method in class IshmaelDetector.MatchFiltParamsDialog
 
actionPerformed(ActionEvent) - Method in class IshmaelLocator.IshLocParamsDialog
 
actionPerformed(ActionEvent) - Method in class likelihoodDetectionModule.NewBandNameDialog
 
actionPerformed(ActionEvent) - Method in class likelihoodDetectionModule.TargetConfigurationNameDialog
 
actionPerformed(ActionEvent) - Method in class NMEA.AcquireNmeaData
 
actionPerformed(ActionEvent) - Method in class NMEA.NMEAParametersDialog
 
actionPerformed(ActionEvent) - Method in class PamController.ModuleOrderDialog
 
actionPerformed(ActionEvent) - Method in class PamUtils.LatLongDialog
 
actionPerformed(ActionEvent) - Method in class PamUtils.LatLongDialogStrip
 
actionPerformed(ActionEvent) - Method in class PamView.ObserverListPopup
 
actionPerformed(ActionEvent) - Method in class PamView.PamSymbolDialog
 
actionPerformed(ActionEvent) - Method in class PamView.PamWaitAnimation
 
actionPerformed(ActionEvent) - Method in class PamView.SourcePanel
action listener to update channel list when a a different source is selected
actionPerformed(ActionEvent) - Method in class rocca.RoccaClickTypeDialog
 
actionPerformed(ActionEvent) - Method in class rocca.RoccaParametersDialog
 
actionPerformed(ActionEvent) - Method in class Spectrogram.SpectrogramParamsDialog
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.Export
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.ExportAll
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.RunAll
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.RunSelTD
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.BatchRun
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.LocaliserOptions
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Options
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Run
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.RunAll
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.RunRealTime
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.SelectDataBlock
 
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Stop
 
actionPerformed(ActionEvent) - Method in class targetMotionModule.panels.EventControlPanel.PopMenuLocalise
 
actionPerformed(ActionEvent) - Method in class WILDInterface.WILDParametersDialog
Starts the open file dialog
actionRecorderTrigger(RecorderTrigger, PamDataUnit, long) - Static method in class SoundRecorder.RecorderControl
static version of actionRecordTrigger can be called from anywhere in PamGuard.
ActionSendEmail - Class in alarm.actions
 
ActionSendEmail(AlarmControl) - Constructor for class alarm.actions.ActionSendEmail
 
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.ActionSendEmail
 
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.AlarmAction
Act on the alarm - called every time the data unit is updated.
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.serial.AlarmSerialAction
 
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.sound.PlaySound
 
add(StreamerDataUnit) - Method in class Array.streamerOrigin.GPSOriginIterator
 
add(StreamerDataUnit) - Method in class Array.streamerOrigin.StreamerDataIterator
 
add(LandmarkData) - Method in class landMarks.LandmarkDatas
 
add(String) - Method in class loggerForms.UDFError
 
add(ItemInformation, String) - Method in class loggerForms.UDFError
 
add(String) - Method in class loggerForms.UDFErrors
 
add(ItemInformation, String) - Method in class loggerForms.UDFErrors
 
add(E) - Method in class PamguardMVC.ChannelIterator
 
add(Tunit) - Method in class PamguardMVC.ReverseChannelIterator
 
add(PamVector) - Method in class pamMaths.PamVector
Add another vector to this vector and return the result in a new Vector
add(PamVector...) - Static method in class pamMaths.PamVector
Add any number of vectors together.
add(JComponent) - Method in class PamView.HidingSidePanel
Add a component to the side panel
add(PamKeyItem) - Method in class PamView.KeyPanel
 
add(String, Component) - Method in class PamView.PamTabbedPane
 
ADD_CONTROLLEDUNIT - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamControlledUnit is added
ADD_DATABLOCK - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamDataBlock is added
ADD_PROCESS - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamProcess is added
addActionListener(ActionListener) - Method in class PamView.ColourComboBox
 
addAddOn(SQLLoggingAddon) - Method in class generalDatabase.SQLLogging
Add an SQL Logging addon - something which adds some standard colums to what it probably a non standard table, e.g.
addAffectedDataBlock(PamDataBlock) - Method in class offlineProcessing.OfflineTask
Add an affected data block.
addAISData(AISDataUnit) - Method in class AIS.AISDataBlock
aisDataUnit is always a new unit extracted from a group of AIS strings, but with a single lot of data.
addAngleData(double) - Method in class angleVetoes.AngleVetoes
Add data to angle stats histogram for display
addAnnotationType(DataAnnotationType) - Method in class annotationMark.MarkModule
This must be called from the concrete super class constructor with a valid SoloannotationType to set up the module.
addArray(PamArray) - Method in class Array.ArrayDialog
 
addArray(PamArray) - Method in class Array.ArrayManager
 
addASighting(boolean) - Method in class rocca.RoccaSidePanel.SidePanel
Ask the user for a new sighting number, and add it to the side panel
addASighting(String) - Method in class rocca.RoccaSidePanel.SidePanel
Add the new sighting number to the sidepanel
addAxisVisulaisation(String, String, String) - Method in class PamGraph3D.PamPanel3D
Add a small icon to show the oreintation of the graph
addBTMenuItems(Container, ClickBTDisplay, boolean, ClickDetection) - Method in class clickDetector.offlineFuncs.ClicksOffline
Add menu items associated with right mouse actions on bearing time display
addButton() - Method in class clickDetector.ClickClassifiers.basic.BasicIdentifierPanel
 
addButton() - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierPanel
 
addButton() - Method in class clickDetector.ClickClassifiers.UserTypesPanel
 
addCalibrationData(VRCalibrationData) - Method in class videoRangePanel.VRParameters
 
AddCalibrationMethod - Class in videoRangePanel.vrmethods
 
AddCalibrationMethod(VRControl) - Constructor for class videoRangePanel.vrmethods.AddCalibrationMethod
 
addCellEditorListener(CellEditorListener) - Method in class likelihoodDetectionModule.AbstractCellEditor
 
addChangeListener(HidingDialogChangeListener) - Method in class PamView.hidingpanel.HidingDialogComponent
 
addChangeObserver(PlaybackChangeObserver) - Method in class soundPlayback.PlaybackSystem
 
addChildSpectroRotateGroup(BranchGroup) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
 
addChildtoGraphicsGroup(BranchGroup) - Method in class PamGraph3D.PamPanel3D
 
addChildtoGraphicsGroup(TransformGroup) - Method in class PamGraph3D.PamPanel3D
 
addChildtoRotateGroup(BranchGroup) - Method in class PamGraph3D.PamPanel3D
Add a branchgroup to the rotateGroup
addChildtoRotateGroup(TransformGroup) - Method in class PamGraph3D.PamPanel3D
Add a transform group to the rotateGroup
addChiValuestoGraph(ArrayList<Double>) - Method in class Localiser.timeDelayLocalisers.MCMCPanel
Add an arraylist of chi values to the graph.
addChunkData(WavChunkData) - Method in class Acquisition.WavHeader
 
addClicks(List<ClickDetection>) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a list of clicks to an event.
addClipGenSettings(ClipGenSetting) - Method in class clipgenerator.ClipSettings
Add a new clip gen setting to the list.
addColumn(Connection, SQLTypes, String, EmptyTableDefinition, PamTableItem) - Static method in class generalDatabase.TableUtilities
 
addComponent(JPanel, Component, GridBagConstraints) - Static method in class Map.GpsTextDisplay
 
addComponent(JPanel, Component, GridBagConstraints) - Static method in class Map.MouseMeasureDisplay
 
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.GroupedSourcePanel
 
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamBorderPanel
 
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamDialog
add to a panel which must use GridBagLayout
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamPanel
 
addContour(WhistleContour) - Method in class whistleClassifier.training.TrainingDataSet
 
addContour(double[], double[]) - Method in class whistleClassifier.training.TrainingDataSet
 
addContour(double[], double[]) - Method in class whistleClassifier.TrainingDataSet
 
addControl(JComponent) - Method in class pamScrollSystem.PamScroller
Add an additional control to the control panel which will sit to the right of or just below the wee buttons used for scroll bar navigation.
addControlledUnit(PamControlledUnit) - Method in class PamController.PamController
 
addControlledUnit(PamControlledUnit) - Method in interface PamController.PamControllerInterface
Adds a PamControlledUnit to the controller.
addControlledUnit(PamControlledUnit) - Method in class PamView.GuiFrameManager
 
addControlledUnit(PamControlledUnit) - Method in class PamView.PamGui
 
addControlledUnit(PamControlledUnit) - Method in class PamView.PamObjectViewer
 
addControlledUnit(PamControlledUnit) - Method in interface PamView.PamViewInterface
 
addCount(double, double, int) - Method in class alarm.AlarmCounter
Add a count to the total.
addCount(double, double, int) - Method in class alarm.AlarmDecibelCounter
 
addCount(double, double, int) - Method in class clickDetector.alarm.ClickAlarmCounter
 
addCrossCorError(ArrayList<ArrayList<Double>>, double, float) - Static method in class Localiser.timeDelayLocalisers.MCMC
Adds the cross correlation error to the time delay errors array.
addCtrlKeyListener(char, ActionListener) - Method in class PamView.CtrlKeyManager
 
addData(double) - Method in class difar.calibration.CalibrationHistogram
Add new data to the histogram
addData(DifarDataUnit) - Method in class difar.trackedGroups.TrackedGroupDataUnit
Add a new bearing to this group.
addData(int, double) - Method in class noiseBandMonitor.BandPerformance
 
addData(double, boolean) - Method in class pamMaths.PamHistogram
Add a single unit value to the histogram and optionally notify all observers
addData(double) - Method in class pamMaths.PamHistogram
Add a single point of data to the histogram but don't notify observers
addData(double, double) - Method in class pamMaths.PamHistogram
Add weighted data to the histogram
addData(long, double[][]) - Method in class SoundRecorder.PamAudioFileStorage
 
addData(long, double[][]) - Method in interface SoundRecorder.RecorderStorage
Adds data to the store.
addDataAnnotation(DataAnnotation) - Method in class PamguardMVC.PamDataUnit
Adds a data annotation to the data unit.
addDataAnnotationType(DataAnnotationType) - Method in class PamguardMVC.PamDataBlock
Add a data annotation type to a datablock.
addDataBlock(PamDataBlock) - Method in class pamScrollSystem.AbstractPamScroller
Add a datablock to the list for this scroller.
addDataFilter(DataFilter) - Method in class generalDatabase.dataExport.DataExportDialog
 
addDatagramData(PamDataUnit, double[]) - Method in class clickDetector.ClickDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class cpod.CPODDataGramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in interface dataGram.DatagramProvider
Add datagram data to the dataGram line.
addDatagramData(PamDataUnit, double[]) - Method in class dbht.offline.DbHtDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class ltsa.LtsaDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class noiseBandMonitor.NoiseBandDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class noiseOneBand.offline.OneBandDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class RightWhaleEdgeDetector.RWEDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class whistlesAndMoans.WMDatagramProvider
 
addDatagramData(PamDataUnit, double[]) - Method in class xBatLogViewer.XBatDatagram
 
addDataItem(TDDataProvider) - Method in class dataPlots.layout.TDGraph
 
addDataItem(TDDataInfo) - Method in class dataPlots.layout.TDGraph
Add a data item to be plotted on this display
addDataListInfo(DataListInfo) - Method in class dataPlots.layout.GraphParameters
 
addDataPoint(DatagramDataPoint) - Method in class dataGram.Datagram
Add a data point to a datagram
addDataPoint(TmapPoint) - Method in class dataMap.OfflineDataMap
Add a new map point into the list.
addDataSet(TrainingDataSet) - Method in class whistleClassifier.training.TrainingDataGroup
 
addDataSet(TrainingDataSet) - Method in class whistleClassifier.TrainingDataGroup
 
addDataToDataBlock(AngleDataUnit) - Method in class IMU.IMUControl
 
addDataToDataBlock(AngleDataUnit) - Method in class IMU.IMUImportMananger
 
addDataUnit(PamDetection) - Method in class PamDetection.TDArrayList
 
addDataUnits(DataLineInfo) - Method in class dataPlots.data.TDDataInfo
Add a type of data unit to the list.
addDeletedUnit(PamDataUnit) - Method in class PamguardMVC.SaveRequirements
Add a deleted unit
addDeleteIndexes(int) - Method in class PamguardMVC.SaveRequirements
 
addDependency(PamDependency) - Method in interface PamModel.PamDependent
 
addDependency(PamDependency) - Method in class PamModel.PamModuleInfo
 
addDetectorMenuItems(Frame, Container) - Method in class clickDetector.offlineFuncs.ClicksOffline
Add offline functions to the top of the main Detector menu when operating in viewer mode.
addDetectorMenuItems(ClickControl, JMenu, int) - Method in class rocca.RoccaControl
Adds a menu item when in viewer mode to the Click Detector menu, to pass events to Rocca for measurement.
addDetectorMenuItems(Frame, JMenu) - Method in class targetMotionModule.TargetMotionLocaliser
 
addDetectorMenuItems(Frame, JMenu) - Method in class targetMotionOld.TargetMotionLocaliser
 
addDisplayMenuItems(JPopupMenu) - Method in class clipgenerator.clipDisplay.ClipDisplayDecorations
Add additional functionality to the popup menu on a display unit.
addDisplayMenuItems(JPopupMenu) - Method in class difar.display.DifarClipDecorations
 
addDisplayMenuItems(JPopupMenu) - Method in class difar.display.DifarClipDecorationsOld1575
 
addDisplayPanelProvider(DisplayPanelProvider) - Static method in class Layout.DisplayProviderList
 
addDistanceMeters(double, double) - Method in class PamUtils.LatLong
Add distances in metres East and metres North to a LatLong
Note that this assumes a flat earth model away from poles, so it's possible to create stupid values.
addDriverToList(String, int[], int[]) - Method in class asiojni.AsioDriverInfos
 
addDriverToList(String, int[], int[]) - Method in class asiojni.AsioJniInterface
 
addElement() - Method in class Array.HydrophoneDialogPanel
 
addF1KeyListener(JComponent) - Method in class loggerForms.controls.LoggerControl
 
addFilenameTag(String, String, String) - Static method in class staticLocaliser.SLCSVLogging
Add a tag to a filename.
addFileType(String) - Method in class Map.MapFileFilter
 
addFileType(String) - Method in class PamUtils.PamFileFilter
 
addFitData(GpsData, LatLong, double, double, double, double, double, double) - Method in class Localiser.bearingLocaliser.GroupDetection
 
addFocusListenerToAllSubComponants(FocusListener, Component) - Static method in class loggerForms.controls.LoggerControl
 
addFolderChangeListener(FolderChangeListener) - Method in class PamUtils.SelectFolder
Add a folder change listener to receive notification if the browse button was used to select a new folder.
addFormDescription(String) - Method in class loggerForms.FormsControl
 
addFragemnt(WhistleFragment) - Method in class whistleClassifier.BasicFragmentStore
 
addFragemnt(WhistleFragment) - Method in interface whistleClassifier.FragmentStore
Add a whistle fragment to the store
addFragemnt(WhistleFragment) - Method in class whistleClassifier.HistoFragmentStore
 
addGraph(ActionEvent) - Method in class dataPlots.HidingControlPanel
 
addGraph(Component) - Method in class dataPlots.layout.TDGraphContainer
 
addGraph() - Method in class dataPlots.TDControl
 
addGraphParameters(GraphParameters) - Method in class dataPlots.TDParameters
 
addHistogram(PamHistogram) - Method in class pamMaths.HistogramDisplay
 
addHoverData(Coordinate3d, PamDataUnit) - Method in class PamView.GeneralProjector
 
addHoverData(Coordinate3d, PamDataUnit, int) - Method in class PamView.GeneralProjector
 
addHydrophone(Hydrophone) - Method in class Array.PamArray
 
addIcon(Icon, String) - Method in class PamView.BasicKeyItem
 
addIcon(Component, String) - Method in class PamView.BasicKeyItem
 
addIconToGrid(Icon) - Method in class PamView.IconPanel
 
addItem(LookupItem) - Method in class generalDatabase.lookupTables.LookupList
Add an item to the list
addItemError() - Method in class loggerForms.ItemDescription
Add one to the item error count.
addKeyListener(FormDescription, String) - Method in class loggerForms.FormsHotKeyControl
Add a new listener for a hotkey.
addLatLong(LatLong) - Method in class Map.MapContour
 
addLayoutComponent(String, Component) - Method in class dataMap.DataMapLayout
 
addLayoutComponent(String, Component) - Method in class PamView.CornerLayout
 
addLayoutComponent(Component, Object) - Method in class PamView.CornerLayout
 
addLayoutComponent(String, Component) - Method in class PamView.VerticalLayout
Not used by this class
addLight(DirectionalLight) - Method in class PamGraph3D.PamPanel3D
Add lighting to the root group.
addListSelectionListener(ListSelectionListener) - Method in class clickDetector.ClickSpectrumTemplateEditDialog
 
addListSelectionListener(ListSelectionListener) - Method in class clickDetector.offlineFuncs.OfflineEventListPanel
 
addLocalisationContents(int) - Method in class PamguardMVC.PamDataBlock
 
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface Localiser.DisplayLocaliserMenu
 
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface Localiser.timeDelayLocalisers.DisplayLocaliserMenu
 
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in class targetMotionModule.panels.EventControlPanel
If we want to add a menu item to pop menu in another module then we need to check we can localise the detection, if so then add an option to the menu to localise the selected detection.
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface targetMotionModule.panels.TargetMotionControlPanel
 
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in class targetMotionModule.TargetMotionControl
 
addLocContents(int) - Method in class PamDetection.AbstractLocalisation
 
addMainComponent(Component) - Method in class PamView.hidingpanel.HidingPanel
Add the mainComponent to the hiding panel
addManagesSymbol(ManagedSymbol) - Method in class PamView.PamSymbolManager
Add a managed symbol - wherever you want to use the symbol manager must implement the ManagedSymbol interface
addMeasurementListener(AngleMeasurementListener) - Method in class angleMeasurement.AngleMeasurement
 
addMenuItem(AbstractButton) - Method in class PamView.MenuItemEnabler
Add a menu item to a menu item enabler.
addMenuItems(JMenuItem, TDInfoMonitor) - Method in class dataPlots.data.TDDataProviderRegister
Add menu items to an existing menu.
addMenuItems(JPopupMenu) - Method in interface PamGraph3D.graphDisplay3D.GraphDisplay3DAxisProvider
Add menu items to the JPopUpMenu() in the diplay.
addMessage(String) - Method in interface whistleClassifier.training.MessageArea
 
addModule(Frame, PamModuleInfo) - Method in class PamController.PamController
 
addModule(Frame, PamModuleInfo) - Method in interface PamController.PamControllerInterface
Add a new PamControlledUnit
addModulePart(DStrModulePartInfo) - Method in class decimus.summarystring.DStrModuleInfo
 
addMouseAdapter(MouseAdapter) - Method in class Map.MapController
 
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.MapController
 
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.MapTabPanelControl
 
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.SimpleMap
 
addMouseGetVirtualLocation(MouseGetVirtualLocation) - Method in class PamGraph3D.PamPanel3D
 
addMouseGetVirtualLocation(MouseGetVirtualLocation) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
 
addMouseListener(MouseListener) - Method in class clickDetector.offlineFuncs.OfflineEventListPanel
 
addMouseListenerToAllSubComponants(MouseListener, Component) - Static method in class loggerForms.controls.LoggerControl
 
addMouseRightClickMenu(MouseBehavior) - Method in class PamGraph3D.PamPanel3D
 
addMouseRightClickMenu(MouseBehavior) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
 
addMouseRotate() - Method in class PamGraph3D.PamPanel3D
Add mouse rotate functionality.
addMouseRotate() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Add mouse rotate functionality
addMouseTranslate() - Method in class PamGraph3D.PamPanel3D
Add mouse translate functionality.
addMouseWheelSource(Component) - Method in class pamScrollSystem.AbstractPamScrollerAWT
Add a component to the scrollers mouse wheel listener.
addMouseZoom() - Method in class PamGraph3D.PamPanel3D
Add mouse zoom functionality.
addNewControl() - Method in class loggerForms.formdesign.FormEditDialog
Add a new control to the end of the controls list.
addNewEndTime(long) - Method in class generalDatabase.DBOfflineDataMapPoint
Add a new end time to the data map
addNoiseMeasurementBand(NoiseMeasurementBand) - Method in class noiseMonitor.NoiseSettings
Add a noise measurement band to the end of the list.
addNoiseMeasurementBand(int, NoiseMeasurementBand) - Method in class noiseMonitor.NoiseSettings
Add a noise measurement band at a specific place in the list.
addObserver(PamObserver) - Method in class PamguardMVC.PamDataBlock
 
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamDataBlock
 
addObserver(PamObserver) - Method in class PamguardMVC.PamObservable
Adds a PamObserver, which will then receive notifications when data is added.
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamObservable
 
addObserver(PamObserver) - Method in class PamguardMVC.PamRawDataBlock
 
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamRawDataBlock
 
addObserver(PamScrollObserver) - Method in class pamScrollSystem.AbstractPamScroller
Ad an observer that will receive notifications when the the scroller moves.
addOfflineDataMap(OfflineDataMap) - Method in class PamguardMVC.PamDataBlock
Adds a new offline datamap to the data block
addOfflineMenuItems(Container, Frame) - Method in class whistleClassifier.offline.ClassifierOffline
 
addOfflineSlice(SliceData) - Method in class whistlesAndMoans.ConnectedRegion
Add in a slice during offline mode.
addOfflineTaskGroup(OfflineTaskGroup) - Method in class PamController.PamControlledUnit
Registers the offlineTaskGroup with the PamControlledUnit on instantiation.
addOtherRelatedMenuItems(Frame, JMenu, String) - Method in class clickDetector.ClickControl
 
addOtherRelatedMenuItems(Frame, JMenu, String) - Method in class PamController.PamControlledUnit
 
addOutputDataBlock(PamDataBlock) - Method in class Array.HydrophoneProcess
 
addOutputDataBlock(PamDataBlock) - Method in class PamguardMVC.PamProcess
Adds an additional PamDataBlock to the process
addPamData(ClickTrainDetection) - Method in class clickDetector.ClickTrainDataBlock
 
addPamData(OfflineEventDataUnit) - Method in class clickDetector.offlineFuncs.OfflineEventDataBlock
 
addPamData(GpsDataUnit) - Method in class GPS.GPSDataBlock
 
addPamData(AngleDataUnit) - Method in class IMU.IMUDataBlock
 
addPamData(FormsDataUnit) - Method in class loggerForms.FormsDataBlock
 
addPamData(NMEADataUnit) - Method in class NMEA.NMEADataBlock
 
addPamData(Tunit) - Method in class PamguardMVC.PamDataBlock
Adds a new PamDataUnit to the PamDataBlock.
addPamData(RawDataUnit) - Method in class PamguardMVC.PamRawDataBlock
 
addPamData(Tunit) - Method in class PamguardMVC.SingletonDataBlock
 
addPamData(SLResult) - Method in class staticLocaliser.StaticLocaliserDataBlock
 
addPamProcess(PamProcess) - Method in class PamController.PamControlledUnit
Adds a PamProcess to the ControlledUnit
addPamScroller(AbstractPamScroller) - Method in class pamScrollSystem.AbstractScrollManager
Add a new scroller to the managed list.
addPamScroller(AbstractPamScroller) - Method in class pamScrollSystem.ViewerScrollerManager
 
addPartData(String, String, double[]) - Method in class decimus.summarystring.DStrDataUnit
 
addPassData(boolean) - Method in class angleVetoes.AngleVetoes
Add data to pas / fail stats for display
addPeak(int, RWEDetectionPeak, int) - Method in class RightWhaleEdgeDetector.RWESound
Add a new peak to extend the slice.
addPeak(WhistlePeak) - Method in class whistleDetector.WhistleShape
Add a new peak to the contour
addPixel(int, int, FFTDataUnit) - Method in class whistlesAndMoans.ConnectedRegion
 
addPlotListener(PlotMouseAdapter) - Method in class dataPlots.layout.TDGraph
Add a mouse plot adapter to each panel on the graph.
addPlotMouseListener(PlotMouseListener) - Method in class dataPlots.layout.TDGraph
Add a plot mouse listener.
addPlotMouseMotionListener(PlotMouseMotionListener) - Method in class dataPlots.layout.TDGraph
Add a plot mouse motion listener.
addPlotZoomer(PlotZoomerAdapter) - Method in class dataPlots.layout.TDGraph
Add a plot zoomer adapter to the graph.
addPositionReport(AISPositionReport) - Method in class AIS.AISDataUnit
 
addQuadrature(PamVector...) - Static method in class pamMaths.PamVector
Add any number of vectors together in quadrature.
addQueueList(StationQueue) - Method in class loc3d_Thode.CrossStationMatcher
 
addRangeSpinnerListener(RangeSpinnerListener) - Method in class pamScrollSystem.RangeSpinner
Add a range spinner listener.
addRawData(RawDataUnit, int) - Method in class Acquisition.rona.RonaGatherer
 
addRelatedMenuItems(Frame, JMenu, String) - Method in class PamController.PamControlledUnit
 
addRequiredDataBlock(PamDataBlock) - Method in class offlineProcessing.OfflineTask
Add a required data block.
addResults(TargetMotionResult[]) - Method in class targetMotionModule.TargetMotionLocaliser
 
addResults(TargetMotionResult[]) - Method in class targetMotionOld.TargetMotionLocaliser
 
addScroller(AbstractPamScroller) - Method in class pamScrollSystem.ScrollerCoupling
Add a new scroller to the coupling
addSelectedDataUnit(FoundDataUnit) - Method in class dataPlots.layout.TDGraph
Add a selected data unit to the current selected data unit list.
addSelectedDataUnit(ArrayList<FoundDataUnit>) - Method in class dataPlots.layout.TDGraph
Add a list of data units to the end current selected data units.
addSelectionListener(ActionListener) - Method in class PamView.SourcePanel
Add a listener to the data source drop down list
addSensorData(float[], int) - Method in class d3.D3DataUnit
 
addSet(SweepClassifierSet) - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierParameters
 
addSet(int, SweepClassifierSet) - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierParameters
 
addSettings(PamControlledUnitSettings) - Method in class PamController.PamSettingsGroup
Add settings to the list of different unit settings
addSettings(Serializable) - Method in class spectrogramNoiseReduction.SpectrogramNoiseSettings
 
addSettingsGroup(PamSettingsGroup) - Method in class generalDatabase.DBSettingsStore
 
addSimObject(SimObject) - Method in class simulatedAcquisition.SimParameters
 
addSourcePanelMonitor(SourcePanelMonitor) - Method in class PamView.SourcePanel
 
addSpecialTimeRange(double) - Method in class pamScrollSystem.RangeSpinner
Add a single special time range, e.g.
addSpecialTimeRange(double[]) - Method in class pamScrollSystem.RangeSpinner
Add some special time ranges, e.g.
addSpeciesParams(DifarParameters.SpeciesParams, boolean) - Method in class difar.DifarParameters
Create a new set of audio clip parameters for a given species
addSpeciesTreeVotes(String, double[]) - Method in class rocca.RoccaSidePanel
Finds the RoccaSightingDataUnit with the passed sighting number, and adds the tree votes to the running total.
addSpeciesTreeVotes(double[]) - Method in class rocca.RoccaSightingDataUnit
Adds the passed array of tree votes to the current array.
addSpectrogram(boolean) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Add a spectrogram to the graph.
addSpectrogram2D() - Method in class clickDetector.ConcatenatedSpectrogram
Adds a spectrogram to the graph
addSpectrogram2D() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Adds a spectrogram to the graph
addSpectrogram3D() - Method in class clickDetector.ConcatenatedSpectrogram
 
addSpectrogram3D() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
 
addSpectrogramMarkObserver(SpectrogramMarkObserver) - Static method in class Spectrogram.SpectrogramMarkObservers
 
addStreamer(Streamer) - Method in class Array.PamArray
Add a streamer and return the streamer id which will be one less than the number of streamers.
addSubDetection(ClickDetection, boolean) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a sub detection with the option of not increasing the click count.
addSubDetection(ClickDetection) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a new click to the event.
addSubDetection(t) - Method in class Localiser.bearingLocaliser.GroupDetection
 
addSubDetection(T) - Method in class PamDetection.PamDetection
Add a sub detection to the sub detection list.
addSuperDetection(PamDetection) - Method in class clickDetector.ClickDetection
 
addSuperDetection(U) - Method in class PamDetection.PamDetection
 
addTab(String, Icon, Component, boolean) - Method in class PamView.hidingpanel.TabbedHidingPane
 
addTab(String, Icon, Component, boolean, int) - Method in class PamView.hidingpanel.TabbedHidingPane
 
addTabChangeListener(ChangeListener) - Method in class PamView.hidingpanel.TabbedHidingPane
 
addTableItem(PamTableItem) - Method in class generalDatabase.EmptyTableDefinition
Adds a new table item
addTableItems(PamTableDefinition) - Method in class annotation.calcs.snr.SnrSqlAddon
 
addTableItems(PamTableDefinition) - Method in class annotation.string.StringSQLLogging
 
addTableItems(PamTableDefinition) - Method in interface generalDatabase.SQLLoggingAddon
Add a load of comumns to an existing table definition
addTableItems(PamTableDefinition) - Method in class targetMotionOld.TargetMotionSQLLogging
 
addTargetConfiguration(TargetConfiguration) - Method in class likelihoodDetectionModule.TreeTableModel
Adds the target configuration.
addTargetConfiguration(TargetConfiguration) - Method in class likelihoodDetectionModule.TreeTableModelAdapter
Adds the target configuration.
addTask(OfflineTask) - Method in class offlineProcessing.OfflineTaskGroup
 
addTip(PamTip) - Method in class tipOfTheDay.TipOfTheDayManager
 
addTipRandom(PamTip) - Method in class tipOfTheDay.TipOfTheDayManager
 
addToSpecialDatablock(PamDataBlock) - Method in class pamScrollSystem.AbstractScrollManager
Add a data block to the special data block list.
addToSpectrum() - Method in class clickDetector.ClickSpectrumTemplateEditDialog
Save the average event data to a ClickTemplate class and add to list of click templates.
addTrackedGroup(String) - Method in class difar.DifarParameters
 
addTreeModelListener(TreeModelListener) - Method in class likelihoodDetectionModule.TreeTableModel
Adds a listener for TreeModel events.
addTriggerParams(DifarParameters.DifarTriggerParams) - Method in class difar.DifarParameters
Add a new trigger Parameters to the list.
addUpdateUnit(PamDataUnit) - Method in class PamguardMVC.SaveRequirements
Add an update unit
addUserDisplay(UserDisplayProvider, DisplayProviderParameters) - Method in class userDisplay.UserDisplayTabPanelControl
Ad a display generated by a different module
addUserDisplayProvider(UserDisplayProvider) - Static method in class userDisplay.UserDisplayControl
Add a reference to the list of providers of user displays.
addVeto(AngleVeto) - Method in class angleVetoes.AngleVetoParameters
Add a veto to the list.
addView(PamViewInterface) - Method in class PamController.PamController
 
addView(PamViewInterface) - Method in interface PamController.PamControllerInterface
Adds a new view to the system
addView(PamViewInterface) - Method in class PamView.GuiFrameManager
 
addWhistle(ShapeDataUnit) - Method in class whistleDetector.EventDataUnit
 
addXMLParameter(Document, Element, double, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new floating point XML element.
addXMLParameter(Document, Element, int, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new integer point XML element.
addXMLParameter(Document, Element, String, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new floating point XML element.
addXMLParameter(Document, Element, boolean, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new boolean point XML element.
addZoomables() - Method in class dataPlots.mouse.PlotZoomerAdapter
Clear any existing zoomables and add new zoomables to each plot panel.
AFTER_LAST - Static variable in class dataMap.OfflineDataMap
 
afterLast() - Method in class generalDatabase.pamCursor.NonScrollablePamCursor
 
afterLast() - Method in class generalDatabase.pamCursor.PamCursor
 
afterLast() - Method in class generalDatabase.pamCursor.ScrollablePamCursor
 
AirgunControl - Class in AirgunDisplay
 
AirgunControl(String) - Constructor for class AirgunDisplay.AirgunControl
 
AirgunDataUnit - Class in AirgunDisplay
 
AirgunDataUnit(long, GpsData) - Constructor for class AirgunDisplay.AirgunDataUnit
 
AirgunDimensionsDrawing - Class in AirgunDisplay
 
AirgunDimensionsDrawing() - Constructor for class AirgunDisplay.AirgunDimensionsDrawing
 
AirgunDisplay - package AirgunDisplay
 
AirgunGraphics - Class in AirgunDisplay
 
AirgunGraphics(AirgunControl) - Constructor for class AirgunDisplay.AirgunGraphics
 
AirgunParameters - Class in AirgunDisplay
 
AirgunParameters() - Constructor for class AirgunDisplay.AirgunParameters
 
AirgunParametersDialog - Class in AirgunDisplay
 
AirgunParametersDialog(Frame) - Constructor for class AirgunDisplay.AirgunParametersDialog
 
AirgunProcess - Class in AirgunDisplay
 
AirgunProcess(AirgunControl) - Constructor for class AirgunDisplay.AirgunProcess
 
AIS - package AIS
 
AISBinaryDataSource - Class in AIS
 
AISBinaryDataSource(AISControl, AISDataBlock) - Constructor for class AIS.AISBinaryDataSource
 
AISControl - Class in AIS
 
AISControl(String) - Constructor for class AIS.AISControl
 
AISDataBlock - Class in AIS
 
AISDataBlock(AISControl, PamProcess) - Constructor for class AIS.AISDataBlock
 
AISDataSet - Interface in NMEA
A set of AIS data strings which can combined with simulated NMEA data for testing purposes.
AISDataUnit - Class in AIS
 
AISDataUnit(long) - Constructor for class AIS.AISDataUnit
Constructor used in data collection - doesn't do much
AISDataUnit(long, String, int) - Constructor for class AIS.AISDataUnit
Constructor used when reading back from binary files.
AISDisplayDialog - Class in AIS
 
AISGraphics - Class in AIS
 
AISGraphics(AISControl, AISDataBlock) - Constructor for class AIS.AISGraphics
 
AISLocalisation - Class in AIS
 
AISLocalisation(AISDataUnit) - Constructor for class AIS.AISLocalisation
 
AISLogger - Class in AIS
 
AISLogger(AISDataBlock, ProcessAISData) - Constructor for class AIS.AISLogger
 
AISParameters - Class in AIS
 
AISParameters() - Constructor for class AIS.AISParameters
 
AISPositionReport - Class in AIS
AIS Position report data
AISPositionReport(long, int, double, double, double, double, double, double) - Constructor for class AIS.AISPositionReport
Constructor to use when reading back from database.
AISReport - Class in AIS
 
AISReport() - Constructor for class AIS.AISReport
 
AISSettingsDialog - Class in AIS
 
AISStaticData - Class in AIS
 
AISStaticData(String, String, int, long, double, String) - Constructor for class AIS.AISStaticData
Constructor for use when reading back from database.
AISStringsTable - Class in AIS
 
alarm - package alarm
 
alarm.actions - package alarm.actions
 
alarm.actions.serial - package alarm.actions.serial
 
alarm.actions.sound - package alarm.actions.sound
 
ALARM_CAN_DO - Static variable in class alarm.actions.AlarmAction
 
ALARM_CANT_DO - Static variable in class alarm.actions.AlarmAction
 
ALARM_DONT_KNOW - Static variable in class alarm.actions.AlarmAction
 
AlarmAction - Class in alarm.actions
 
AlarmAction(AlarmControl) - Constructor for class alarm.actions.AlarmAction
 
alarmColours - Static variable in class alarm.AlarmParameters
 
AlarmControl - Class in alarm
 
AlarmControl(String) - Constructor for class alarm.AlarmControl
 
AlarmCounter - Class in alarm
 
AlarmCounter(AlarmControl) - Constructor for class alarm.AlarmCounter
 
AlarmCounterProvider - Class in alarm
 
AlarmCounterProvider() - Constructor for class alarm.AlarmCounterProvider
 
AlarmDataBlock - Class in alarm
 
AlarmDataBlock(AlarmProcess, String) - Constructor for class alarm.AlarmDataBlock
 
AlarmDataPoint - Class in alarm
 
AlarmDataPoint(long, double) - Constructor for class alarm.AlarmDataPoint
 
AlarmDataSource - Interface in alarm
 
AlarmDataUnit - Class in alarm
 
AlarmDataUnit(long) - Constructor for class alarm.AlarmDataUnit
 
AlarmDecibelCounter - Class in alarm
BAse class for any alarm data source which is returning some kind of data measured in dB, which needs to be added in a different way to normal.
AlarmDecibelCounter(AlarmControl) - Constructor for class alarm.AlarmDecibelCounter
 
AlarmDialog - Class in alarm
 
AlarmDisplayTable - Class in alarm
 
AlarmDisplayTable(AlarmControl) - Constructor for class alarm.AlarmDisplayTable
 
AlarmLogging - Class in alarm
 
AlarmOfflineTask - Class in alarm
 
AlarmOfflineTask(AlarmControl) - Constructor for class alarm.AlarmOfflineTask
 
AlarmParameters - Class in alarm
 
AlarmParameters() - Constructor for class alarm.AlarmParameters
 
AlarmProcess - Class in alarm
 
AlarmProcess(AlarmControl) - Constructor for class alarm.AlarmProcess
 
alarmRange - Variable in class staticLocaliser.StaticLocaliserParams
Min range for alarm system.
AlarmSerialAction - Class in alarm.actions.serial
Alarm action for serial port output.
AlarmSerialAction(AlarmControl) - Constructor for class alarm.actions.serial.AlarmSerialAction
 
AlarmSerialDialog - Class in alarm.actions.serial
 
AlarmSerialInterface - Class in alarm.actions.serial
Singleton class for all alarm actions to share a single serial port, it's settings etc.
AlarmSerialSettings - Class in alarm.actions.serial
 
AlarmSerialSettings() - Constructor for class alarm.actions.serial.AlarmSerialSettings
 
AlarmSidePanel - Class in alarm
 
AlarmSidePanel(AlarmControl) - Constructor for class alarm.AlarmSidePanel
 
alarmTxtAlert(ClickAlarm) - Method in class clickDetector.ClickSidePanel.SidePanel
Changes the label below the 'test alarm' button to indicate which, if any, alarm is currently sounding.
ALGORITHM_SELECTION_CHANGED - Static variable in class targetMotionModule.TargetMotionControl
a selected algorithm has been changed.
algorithmType - Variable in class staticLocaliser.panels.HyperbolicLocParams
Define what type of algorithm to use- 3D localisation, 2D localisation or linear
ALL_CHANNELS - Static variable in class clipgenerator.ClipGenSetting
 
ALL_CHANNELS - Static variable in class difar.DifarParameters.DifarTriggerParams
include all channels in the clip
allAvailable - Variable in class Map.MapDetectionData
 
allocateComplexArray(int) - Static method in class fftManager.Complex
Allocate a new complex array in which each element has been created and it's contents set to 0 +i0;
allocateComplexArray(int, int) - Static method in class fftManager.Complex
 
alwaysClassify - Variable in class whistleClassifier.WhistleClassificationParameters
classify anyway, even if not enough fragments when quitting due to low whistle numbers.
AMBIG - Static variable in class rocca.RoccaClassifier
 
AMBIG - Static variable in class rocca.RoccaRFModel
 
amlitudeMinVal - Variable in class clipgenerator.clipDisplay.ClipDisplayParameters
 
AmmcDemux - Class in difar.demux
Experimental java based demultiplexer.
AmmcDemux() - Constructor for class difar.demux.AmmcDemux
 
AmpControl - Class in amplifier
 
AmpControl(String) - Constructor for class amplifier.AmpControl
 
AmpDialog - Class in amplifier
 
AmplifiedDataBlock - Class in amplifier
 
AmplifiedDataBlock(String, PamProcess, int, float) - Constructor for class amplifier.AmplifiedDataBlock
 
AmplifiedDataBlock(String, PamProcess, int, float, boolean) - Constructor for class amplifier.AmplifiedDataBlock
 
amplifier - package amplifier
 
amplifyMeasuredAmplitudeByDB(double) - Method in class PamDetection.AcousticDataUnit
 
amplifyMeasuredAmplitudeByLinear(double) - Method in class PamDetection.AcousticDataUnit
 
AMPLITUDE - Static variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
 
amplitude - Variable in class simulatedAcquisition.SimObject
 
AMPLITUDE_SCALE_DBREMPA - Static variable in class PamDetection.AcousticDataUnit
Amplitude value is in dB relative to 1 micropascal
AMPLITUDE_SCALE_LINREFSD - Static variable in class PamDetection.AcousticDataUnit
Amplitude scale is linear relative to full scale
amplitudeLimits - Variable in class Spectrogram.SpectrogramParameters
Limits of amplitude range
amplitudeRange - Variable in class clickDetector.BTDisplayParameters
 
amplitudeRangeVal - Variable in class clipgenerator.clipDisplay.ClipDisplayParameters
 
amplitudeScaledLineLength - Variable in class difar.DifarParameters
Auto scale line length depending on range
amplitudeSelect - Variable in class clickDetector.BTDisplayParameters
 
ampMax - Variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
 
ampMin - Variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
 
AmpParameters - Class in amplifier
 
AmpParameters() - Constructor for class amplifier.AmpParameters
 
AmpProcess - Class in amplifier
 
AmpProcess(AmpControl) - Constructor for class amplifier.AmpProcess
 
analEndTime - Variable in class PamController.PamViewParameters
Analysis offline may have gone through the data multiple times.
analSelection - Variable in class clickDetector.offlineFuncs.OfflineParameters
 
analStartTime - Variable in class PamController.PamViewParameters
Analysis offline may have gone through the data multiple times.
ANALYSE_ALLDATA - Static variable in class clickDetector.offlineFuncs.OfflineParameters
 
ANALYSE_DATA - Static variable in class whistleClassifier.WhistleClassificationParameters
Analyse new data using existing settings.
ANALYSE_LOADEDDATA - Static variable in class clickDetector.offlineFuncs.OfflineParameters
 
AnalyseMCMCResults(ArrayList<Point3f>, ArrayList<Double>, int) - Method in class Localiser.timeDelayLocalisers.MCMC
Take an ArrayList of the Markov chain jumps and chi-squared values of each jump and calculate source position.
analyzeOfflineClicks(OfflineEventDataUnit) - Method in class rocca.RoccaControl
 
anchor - Variable in class PamView.CornerLayoutContraint
 
ang() - Method in class fftManager.Complex
Gets the angle of a complex number
angle(PamVector) - Method in class pamMaths.PamVector
Calculate the angle between two vectors
ANGLE_RE_ARRAY - Static variable in class Array.HydrophoneLocator
 
ANGLE_RE_NORTH - Static variable in class Array.HydrophoneLocator
 
ANGLE_RE_SHIP - Static variable in class Array.HydrophoneLocator
 
ANGLE_TAB - Static variable in class videoRangePanel.panels.VRParametersDialog
 
AngleCalibration - Class in angleMeasurement
Class to sort out angle calibration data.
AngleCalibration(double[], double[]) - Constructor for class angleMeasurement.AngleCalibration
 
AngleCalibrationDialog - Class in angleMeasurement
 
AngleControl - Class in angleMeasurement
 
AngleControl(String) - Constructor for class angleMeasurement.AngleControl
 
angleCorrection - Variable in class videoRangePanel.VRMeasurement
difference between image bearing and bearing to animal
AngleDataBlock - Class in angleMeasurement
 
AngleDataBlock(AngleControl, String, PamProcess) - Constructor for class angleMeasurement.AngleDataBlock
 
angleDataBlock - Variable in class videoRangePanel.VRParameters
 
angleDataSource - Variable in class beakedWhaleProtocol.BeakedParameters
 
AngleDataUnit - Class in angleMeasurement
Data unit for storing angular information, often used to store data from imu intruments (inertial measurement unit) and heading data from compass sensors.
AngleDataUnit(long, double, double, double) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for heading data: Primarily used in AngleMeasurment module
AngleDataUnit(long, Double[]) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for IMU angle data.
AngleDataUnit(long, Double[], Double[]) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for IMU angle data.
AngleListener - Class in videoRangePanel.externalSensors
 
AngleListener(VRControl) - Constructor for class videoRangePanel.externalSensors.AngleListener
 
AngleLogging - Class in angleMeasurement
 
AngleLogging(AngleControl, PamDataBlock) - Constructor for class angleMeasurement.AngleLogging
 
AngleLoggingDialogPanel - Class in angleMeasurement
 
AngleLoggingDialogPanel() - Constructor for class angleMeasurement.AngleLoggingDialogPanel
 
AngleLoggingParameters - Class in angleMeasurement
 
AngleLoggingParameters() - Constructor for class angleMeasurement.AngleLoggingParameters
 
angleMeasurement - package angleMeasurement
 
AngleMeasurement - Class in angleMeasurement
 
AngleMeasurement(String) - Constructor for class angleMeasurement.AngleMeasurement
 
AngleMeasurementListener - Interface in angleMeasurement
 
angleOffset - Variable in class angleMeasurement.AngleParameters
 
AngleParameters - Class in angleMeasurement
 
AngleParameters() - Constructor for class angleMeasurement.AngleParameters
 
AngleProcess - Class in angleMeasurement
 
AngleProcess(AngleControl) - Constructor for class angleMeasurement.AngleProcess
 
AngleSidePanel - Class in angleMeasurement
 
AngleSidePanel(AngleControl) - Constructor for class angleMeasurement.AngleSidePanel
 
angleUpdateInterval - Variable in class beakedWhaleProtocol.BeakedParameters
 
AngleVeto - Class in angleVetoes
Data for a single angle veto.
AngleVeto() - Constructor for class angleVetoes.AngleVeto
 
AngleVeto(int, double, double) - Constructor for class angleVetoes.AngleVeto
 
AngleVetoDialog - Class in angleVetoes
Dialog to get data for a single angle veto.
AngleVetoDisplay - Class in angleVetoes
Dispaly for angle veto.
AngleVetoDisplay(AngleVetoes) - Constructor for class angleVetoes.AngleVetoDisplay
 
angleVetoes - package angleVetoes
 
AngleVetoes - Class in angleVetoes
Class to support functions to handle vetoes on angles to clicks
AngleVetoes(PamControlledUnit) - Constructor for class angleVetoes.AngleVetoes
 
AngleVetoesDialog - Class in angleVetoes
Dialog to manage multiple angle vetoes.
AngleVetoParameters - Class in angleVetoes
PArameters controlling angle vetoes for a particular detector.
AngleVetoParameters() - Constructor for class angleVetoes.AngleVetoParameters
 
animalCol - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
 
animalMark - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
 
animalMarker - Static variable in class videoRangePanel.panels.VRPanel
 
animalMarker - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
 
animalPoint - Variable in class videoRangePanel.VRMeasurement
Animal point on the image
animalSymbol - Static variable in class videoRangePanel.panels.VRPanel
 
annotateDataBlock(Window, PamDataBlock) - Method in class annotation.tasks.AnnotationManager
 
annotation - package annotation
 
annotation.calcs.snr - package annotation.calcs.snr
 
annotation.string - package annotation.string
 
annotation.tasks - package annotation.tasks
 
AnnotationDialogPanel - Interface in annotation
General interface for dialog panels which get incorporated into other dialog panels for editing one or more annotations of a data unit.
AnnotationManager - Class in annotation.tasks
 
AnnotationManager() - Constructor for class annotation.tasks.AnnotationManager
 
annotationMark - package annotationMark
 
annotationMark.spectrogram - package annotationMark.spectrogram
 
AnnotationOfflineTask - Class in annotation.tasks
 
AnnotationOfflineTask(PamDataBlock, DataAnnotationType) - Constructor for class annotation.tasks.AnnotationOfflineTask
 
AnnotationsPopup - Class in PamView
 
AnnotationsPopup(Window, Point, PamDataBlock) - Constructor for class PamView.AnnotationsPopup
 
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.AbstractPamScroller
Another managed scroller moved it's position
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.PamScroller
 
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.PamScrollSlider
 
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.ScrollPaneAddon
 
anotherScrollerMovedOuter(long, long) - Method in class pamScrollSystem.AbstractPamScroller
Another managed scroller moved its outer position - will cause new data to be loaded.
ANSIStandard - Class in Filters
 
ANSIStandard() - Constructor for class Filters.ANSIStandard
 
append(double[][]) - Method in class wavFiles.WavFile
Append to an audio file.
appendDelays - Variable in class staticLocaliser.StaticLocaliserParams
append time delays to file if true.
appendStringToOutputField(String) - Method in class UserInput.UserInputPanel
 
appendStringToOutputField(long, String) - Method in class UserInput.UserInputPanel
 
appendZoomMenuItems(Container) - Method in class PamView.zoomer.Zoomer
Add menu items associated with zooming into a pre-existing menu.
apply_cal(float[]) - Method in class d3.calibration.CalibrationInfo
Apply this calibration to an aarry of data.
apply_cal(float[], Double, Double) - Method in class d3.calibration.CalibrationInfo
Apply this calibration to an array of data.
applyHanningWindow(double[]) - Method in class clickDetector.ClickDetection
apply a Hanning window to the passed dataset.
applyMask(Complex[], double[]) - Static method in class PamUtils.MatrixOps
 
applyMask(double[], double[]) - Static method in class PamUtils.MatrixOps
 
applyPropertyChange(PropertyChangeEvent, JLayer) - Method in class PamView.PamWaitAnimation
 
APPROACH_START - Static variable in class beakedWhaleProtocol.BeakedExperimentData
 
arbPanel - Variable in class Filters.FilterDialogPanel
 
arbTableModel - Variable in class Filters.FilterDialogPanel
 
areConfigurationsWithErrors() - Method in class likelihoodDetectionModule.LikelihoodDetectionParameters
Are configurations with errors scans the TargetConfigurations that are currently configured and returns a boolean value indicating whether any of them have erroneous values or are inconsistent with current acquisition (audio data source) settings.
areFieldsSet() - Method in class rocca.RoccaClassifier
 
areSampleSettingsOk(int, float) - Method in class Acquisition.DaqSystem
 
areSampleSettingsOk(int, float) - Method in class asiojni.ASIOSoundSystem
 
arrangeWindows() - Method in class clickDetector.ClickTabPanel
 
Array - package Array
 
Array.importHydrophoneData - package Array.importHydrophoneData
 
Array.streamerOrigin - package Array.streamerOrigin
 
ARRAY_MANAGER - Static variable in class videoRangePanel.LocationManager
Goes through the array manager and determines a location of the 'boat'.
ARRAY_TYPE_LINE - Static variable in class Array.ArrayManager
Line array of two or more elements
ARRAY_TYPE_NONE - Static variable in class Array.ArrayManager
No array specified
ARRAY_TYPE_PLANE - Static variable in class Array.ArrayManager
Three or more Hydrophones all in the same plane
ARRAY_TYPE_POINT - Static variable in class Array.ArrayManager
Point array (single phone or multiple phones at same point)
ARRAY_TYPE_VOLUME - Static variable in class Array.ArrayManager
Four or more hydrophones not in the same plane.
ArrayAccelControl - Class in ArrayAccelerometer
 
ArrayAccelControl(String) - Constructor for class ArrayAccelerometer.ArrayAccelControl
 
ArrayAccelDataBlock - Class in ArrayAccelerometer
 
ArrayAccelDataBlock(String, ArrayAccelProcess) - Constructor for class ArrayAccelerometer.ArrayAccelDataBlock
 
ArrayAccelDataUnit - Class in ArrayAccelerometer
 
ArrayAccelDataUnit(long, Double[], Double[]) - Constructor for class ArrayAccelerometer.ArrayAccelDataUnit
 
ArrayAccelDialog - Class in ArrayAccelerometer
 
ArrayAccelerometer - package ArrayAccelerometer
 
ArrayAccelLogging - Class in ArrayAccelerometer
 
ArrayAccelLogging(ArrayAccelControl, PamDataBlock) - Constructor for class ArrayAccelerometer.ArrayAccelLogging
 
ArrayAccelPanel - Class in ArrayAccelerometer
 
ArrayAccelPanel(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelPanel
 
ArrayAccelParams - Class in ArrayAccelerometer
 
ArrayAccelParams() - Constructor for class ArrayAccelerometer.ArrayAccelParams
 
ArrayAccelProcess - Class in ArrayAccelerometer
 
ArrayAccelProcess(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelProcess
 
ArrayAccelSidePanel - Class in ArrayAccelerometer
 
ArrayAccelSidePanel(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelSidePanel
 
arrayDeserialized() - Method in class Array.PamArray
called just after the array settings have been loaded so that data can be loaded back into the Hydrophone localisers.
ArrayDialog - Class in Array
Main dialog for hydrophone array configuration
ArrayDump - Class in PamUtils
 
ArrayDump() - Constructor for class PamUtils.ArrayDump
 
ArrayListMath - Class in PamUtils
 
ArrayListMath() - Constructor for class PamUtils.ArrayListMath
 
ArrayManager - Class in Array
Manager for different array configurations.
ArrayReferenceSystem - Class in PamController.masterReference
 
ArrayReferenceSystem() - Constructor for class PamController.masterReference.ArrayReferenceSystem
 
arrayToMatrix(PamVector[]) - Static method in class pamMaths.PamVector
convert a series of vectors into a Matrix
ASCII6 - Static variable in class NMEA.NMEABitArray
Lookup table to convert from integer to 6 bit ASCII data for AIS vessel names, destinations, etc.
Ascii6Bit - Class in PamUtils
Utilities for converting data to and from an Ascii 6 bit format.
Ascii6Bit(byte[]) - Constructor for class PamUtils.Ascii6Bit
 
Ascii6Bit(String, int) - Constructor for class PamUtils.Ascii6Bit
 
asioController - Variable in class asiojni.AsioJniInterface
 
AsioDriverInfo - Class in asiojni
 
AsioDriverInfos - Class in asiojni
 
asioDriverInfos - Variable in class asiojni.AsioJniInterface
 
asioDriverSettings - Variable in class asiojni.AsioJniInterface
 
ASIOFilePlaybackSystem - Class in asiojni
 
ASIOFilePlaybackSystem(FilePlayback) - Constructor for class asiojni.ASIOFilePlaybackSystem
 
asiojni - package asiojni
 
asioJniInterface - Variable in class asiojni.AsioDriverInfos
 
AsioJniInterface - Class in asiojni
 
AsioJniInterface(ASIOSoundSystem) - Constructor for class asiojni.AsioJniInterface
 
AsioJniInterface.AsioController - Class in asiojni
 
AsioJniInterface.AsioController() - Constructor for class asiojni.AsioJniInterface.AsioController
 
AsioJniInterface.AsioDriverSettings - Class in asiojni
 
ASIOPlaybackDialogComponent - Class in soundPlayback
This currently doens't seem to need to do anything.
ASIOPlaybackDialogComponent(ASIOSoundSystem, ASIOPlaybackSystem) - Constructor for class soundPlayback.ASIOPlaybackDialogComponent
 
ASIOPlaybackSystem - Class in asiojni
 
ASIOPlaybackSystem(ASIOSoundSystem) - Constructor for class asiojni.ASIOPlaybackSystem
 
ASIOSoundSystem - Class in asiojni
Everything and everything to do with controlling and reading ASIO sound cards.
ASIOSoundSystem(AcquisitionControl) - Constructor for class asiojni.ASIOSoundSystem
 
asioStart() - Method in class asiojni.AsioJniInterface.AsioController
 
asioStop() - Method in class asiojni.AsioJniInterface.AsioController
 
assign(Complex) - Method in class fftManager.Complex
Assign new real and imaginary values to an existing Complex number
assign(double, double) - Method in class fftManager.Complex
Assign new real and imaginary values to an existing Complex number
assign(FilterParams) - Method in class Filters.FilterParams
 
assign(Coordinate3d) - Method in class PamUtils.Coordinate3d
 
assign(MapContourValues) - Method in class PamUtils.MapContourValues
 
associatedSignalBandIdentifier - Variable in class likelihoodDetectionModule.GuardBand
The identifier of the signal band that this guard band should be associated with.
AttTest - Class in rocca
Generates a little ARFF file with different attribute types.
AttTest() - Constructor for class rocca.AttTest
 
AudioFileFuncs - Class in Acquisition
 
AudioFileFuncs() - Constructor for class Acquisition.AudioFileFuncs
 
AutecDataBlock - Class in autecPhones
 
AutecDataBlock(PamProcess) - Constructor for class autecPhones.AutecDataBlock
 
AutecDataUnit - Class in autecPhones
 
AutecDataUnit(int, double, double, double, boolean) - Constructor for class autecPhones.AutecDataUnit
 
AutecDataUnit(double, double) - Constructor for class autecPhones.AutecDataUnit
 
AutecGraphics - Class in autecPhones
 
AutecGraphics() - Constructor for class autecPhones.AutecGraphics
 
autecPhones - package autecPhones
 
AutecPhonesControl - Class in autecPhones
 
AutecPhonesControl(String) - Constructor for class autecPhones.AutecPhonesControl
 
AUTO_UPDATE_CANT - Static variable in class loggerForms.controls.LoggerControl
 
AUTO_UPDATE_FAIL - Static variable in class loggerForms.controls.LoggerControl
 
AUTO_UPDATE_SUCCESS - Static variable in class loggerForms.controls.LoggerControl
 
AutoAlertPanel - Class in loggerForms.formdesign.propertypanels
 
AutoAlertPanel(FormEditor, PropertyTypes) - Constructor for class loggerForms.formdesign.propertypanels.AutoAlertPanel
 
autoAnnotate(PamDataUnit) - Method in class annotation.calcs.snr.SNRAnnotationType
 
autoAnnotate(PamDataUnit) - Method in class annotation.DataAnnotationType
Automatically annotate the data unit with this annotation.
AUTOCOMPLETE - Static variable in class beakedWhaleProtocol.BeakedExperimentData
 
autoHide() - Method in class dataMap.DataStreamPanel
 
autoNewFiles - Variable in class binaryFileStorage.BinaryStoreSettings
 
autoProcess - Variable in class difar.DifarParameters
whether to autoprocess vessel clips(now the only ones that can be)
autoSaveAngleOnly - Variable in class difar.DifarParameters
when auto saving the difar result either the angle can be saved or the angle and range can be saved if it has range
autoSaveDResult - Variable in class difar.DifarParameters
 
autoSaveTime - Variable in class difar.DifarParameters
time afterwhich item has been sitting in difargram to autosave if no user interaction
autoScale - Variable in class dataPlots.layout.GraphParameters
 
autoScale - Variable in class dbht.DbHtDisplayParams
 
autoScale - Variable in class noiseMonitor.NoiseDisplaySettings
 
autoScale - Variable in class noiseOneBand.OneBandDisplayParams
 
autoScaleWaveform - Variable in class Spectrogram.SpectrogramParameters
 
autoSetDataBlockMixMode() - Method in class PamguardMVC.PamDataBlock
 
autoUpdate() - Method in class loggerForms.controls.LatLongControl
 
autoUpdate() - Method in class loggerForms.controls.LatLongTimeControl
 
autoUpdate() - Method in class loggerForms.controls.LoggerControl
Automatically update a control.
autoUpdate() - Method in class loggerForms.controls.NMEAControl
 
autoUpdate() - Method in class loggerForms.controls.TimeControl
 
autoUpdate() - Method in class loggerForms.controls.TimestampControl
 
average() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
Returns the processed average data.
averageChains(ArrayList<MCMCTDResults>) - Method in class Localiser.timeDelayLocalisers.MCMC
 
AveragedSpectraDataUnit - Class in likelihoodDetectionModule.linearAverageSpectra
This is the data type produced by the linearAverageSpectra
AveragedSpectraDataUnit(long, int, long, long) - Constructor for class likelihoodDetectionModule.linearAverageSpectra.AveragedSpectraDataUnit
 
averageReady() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
 
averageStartSample() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
 
AverageSubtraction - Class in spectrogramNoiseReduction.averageSubtraction
 
AverageSubtraction() - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtraction
 
AverageSubtractionDialogBits - Class in spectrogramNoiseReduction.averageSubtraction
 
AverageSubtractionDialogBits(AverageSubtraction) - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtractionDialogBits
 
AverageSubtractionParameters - Class in spectrogramNoiseReduction.averageSubtraction
 
AverageSubtractionParameters() - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtractionParameters
 
averageTimestamp() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
 
AWTScheduler - Class in PamController
Class to schedule SwingWorker tasks so that they execute one at a time.
AXIS_SIZE - Static variable in class rocca.RoccaSpecPopUp
 
axisVis - Variable in class PamGraph3D.PamPanel3D
 
AxisVisualisation - Class in PamGraph3D
 
AxisVisualisation(Frame) - Constructor for class PamGraph3D.AxisVisualisation
 
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