A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

B

b - Variable in class Map.StraightLineGrid

b - Variable in class PamController.XMLTest.TestClass

b - Variable in class PamView.PamObjectViewer.DataBlockAnnotationsList

b - Variable in class PamView.PamObjectViewer.DataBlockObserverList

b - Variable in class Stats.LinFit

b1 - Variable in class decimator.DecimatorProcess

b2 - Variable in class decimator.DecimatorProcess

backButton - Variable in class PamView.PamHelp

backendCInterfase - package backendCInterfase

BackendManager - Class in backendCInterfase

Single manager class for all backend C processes (processes which take on the job of normal PamProcesses and perform ultimately on the OMAP DSP.

BackendManager() - Constructor for class backendCInterfase.BackendManager

BackendProcess - Class in backendCInterfase

Abstract class for backend processes.

BackendProcess(PamProcess) - Constructor for class backendCInterfase.BackendProcess

backendProcess - Variable in class PamguardMVC.PamProcess

Process which will work across the JNI to run in C prior to code being passed to Java.

backEndProcesses - Variable in class backendCInterfase.BackendManager

background - Variable in class seismicVeto.VetoBackgroundDataUnit

background - Variable in class seismicVeto.VetoProcess.ChannelDetector

background - Variable in class WorkshopDemo.BackgroundDataUnit

background - Variable in class WorkshopDemo.WorkshopParametersDialog

background - Variable in class WorkshopDemo.WorkshopProcess.ChannelDetector

backgroundAlpha - Variable in class likelihoodDetectionModule.normalizer.DecayingAverageNormAlphas

backgroundAverager - Variable in class likelihoodDetectionModule.normalizer.DecayingAverageNorm.ExponentialAveragerPair

backgroundConstant - Variable in class seismicVeto.VetoParameters

backgroundDataBlock - Variable in class seismicVeto.VetoPluginPanelProvider

backgroundDataBlock - Variable in class seismicVeto.VetoProcess

backgroundDataBlock - Variable in class WorkshopDemo.WorkshopPluginPanelProvider.WorkshopPluginPanel

backgroundDataBlock - Variable in class WorkshopDemo.WorkshopProcess

BackgroundDataUnit - Class in WorkshopDemo

BackgroundDataUnit(long, int, long, long, double) - Constructor for class WorkshopDemo.BackgroundDataUnit

BackgroundNode - Class in likelihoodDetectionModule

Represents the background seconds setting for a band.

BackgroundNode(double, double, SignalNode, double) - Constructor for class likelihoodDetectionModule.BackgroundNode

backgroundNoise - Variable in class simulatedAcquisition.SimParameters

backgroundSeconds - Variable in class likelihoodDetectionModule.GuardBand

The background seconds.

backgroundSeconds - Variable in class likelihoodDetectionModule.SignalBand

The background seconds.

backgroundTimeConstant - Variable in class likelihoodDetectionModule.normalizer.NormalizerProcessTimeConstants

backgroundTimeConstant - Variable in class WorkshopDemo.WorkshopProcessParameters

time constant for background noise measurement.

backgroundUpdateConstant - Variable in class seismicVeto.VetoProcess

backgroundUpdateConstant - Variable in class WorkshopDemo.WorkshopProcess

constatns for background update.

backgroundUpdateConstant1 - Variable in class seismicVeto.VetoProcess

backgroundUpdateConstant1 - Variable in class WorkshopDemo.WorkshopProcess

constatns for background update.

backgroundWidth - Variable in class likelihoodDetectionModule.normalizer.SplitWindowNormWidths

backNode - Variable in class likelihoodDetectionModule.SignalNode

band1Energy - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

band1Energy - Variable in class clickDetector.ClickTypeParams

band1Freq - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

band1Freq - Variable in class clickDetector.ClickTypeParams

band2Energy - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

band2Energy - Variable in class clickDetector.ClickTypeParams

band2Freq - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

band2Freq - Variable in class clickDetector.ClickTypeParams

bandEnergyDifference - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

bandEnergyDifference - Variable in class clickDetector.ClickTypeParams

bandIndex - Variable in class likelihoodDetectionModule.thresholdDetector.DetectionKey

bandIndex() - Method in class likelihoodDetectionModule.thresholdDetector.DetectionKey

bandIndex - Variable in class likelihoodDetectionModule.thresholdDetector.TestConsumer.EventInfo

bandIndex() - Method in class likelihoodDetectionModule.thresholdDetector.TestConsumer.EventInfo

bandItems - Variable in class noiseMonitor.NoiseLogging

bandName - Variable in class likelihoodDetectionModule.AssociatedBandNode

bandPass - Variable in class Filters.FilterDialog

bandStop - Variable in class Filters.FilterDialog

bandType - Variable in class likelihoodDetectionModule.NewBandNameDialog

The band type.

bandwidth - Variable in class Array.Hydrophone

bandwidth - Variable in class Array.Preamplifier

bandwidth0 - Variable in class Acquisition.AcquisitionDialog

bandwidth0 - Variable in class Array.HydrophoneElementDialog.SensitivityPanel

bandwidth1 - Variable in class Acquisition.AcquisitionDialog

bandwidth1 - Variable in class Array.HydrophoneElementDialog.SensitivityPanel

barBit - Variable in class Acquisition.FolderInputSystem

barId - Variable in class SoundRecorder.RecorderTabPanel.RecorderPanel.LevelsPanel.BarEnableListener

barPosition - Variable in class Spectrogram.ScalePanel

barTimer - Variable in class PamView.TopToolBar

BARTLETT - Static variable in class Spectrogram.WindowFunction

bartlett(int) - Static method in class Spectrogram.WindowFunction

baseDrawing - Variable in class Map.MapPanel

basePropagation - Variable in class propagation.SurfaceEcho

baseXform - Variable in class Map.MapPanel

BasicClickIdentifier - Class in clickDetector.ClickClassifiers.basic

BasicClickIdentifier(ClickControl) - Constructor for class clickDetector.ClickClassifiers.basic.BasicClickIdentifier

basicClickIdentifier - Variable in class clickDetector.ClickClassifiers.basic.BasicIdentifierPanel

BasicClickIdentifier.MenuClickTypes - Class in clickDetector.ClickClassifiers.basic

Action listener for the click types menu.

BasicClickIdentifier.MenuClickTypes(Frame) - Constructor for class clickDetector.ClickClassifiers.basic.BasicClickIdentifier.MenuClickTypes

BasicClickIdParameters - Class in clickDetector

BasicClickIdParameters() - Constructor for class clickDetector.BasicClickIdParameters

basicClickIdParameters - Variable in class clickDetector.ClickClassifiers.basic.BasicIdentifierPanel

basicClickIdParameters - Variable in class clickDetector.ClickClassifiers.basic.ClickTypeDialog

basicClickIdParameters - Variable in class clickDetector.ClickClassifiers.ClickTypesDialog

BasicFragmentStore - Class in whistleClassifier

BasicFragmentStore(float) - Constructor for class whistleClassifier.BasicFragmentStore

basicIdentifier - Variable in class clickDetector.ClickClassifiers.ClickClassifierManager

basicIdentifierPanel - Variable in class clickDetector.ClickClassifiers.basic.BasicClickIdentifier

BasicIdentifierPanel - Class in clickDetector.ClickClassifiers.basic

BasicIdentifierPanel(BasicClickIdentifier, Frame, ClickControl) - Constructor for class clickDetector.ClickClassifiers.basic.BasicIdentifierPanel

BasicKeyItem - Class in PamView

BasicKeyItem() - Constructor for class PamView.BasicKeyItem

BasicKeyItem(Icon, String) - Constructor for class PamView.BasicKeyItem

BasicKeyItem(Component, String) - Constructor for class PamView.BasicKeyItem

BasicPDProvider - Class in whistleDetector

BasicPDProvider() - Constructor for class whistleDetector.BasicPDProvider

BasicPeakDetector - Class in whistleDetector

BasicPeakDetector(WhistleControl, WhistleDetector, FFTDataBlock, int) - Constructor for class whistleDetector.BasicPeakDetector

batchConvertClicks(Frame) - Method in class clickDetector.ClickControl

Batch convert RainbowClick files to the latest PAMGUARD binary format.

BatchFileConversion - Class in clickDetector.offlineFuncs

BatchFileConversion(Window, ClickControl, BinaryStore) - Constructor for class clickDetector.offlineFuncs.BatchFileConversion

BatchFileConversion.ConversionProgress - Class in clickDetector.offlineFuncs

BatchFileConversion.ConversionProgress(int, int, int, int, int, File) - Constructor for class clickDetector.offlineFuncs.BatchFileConversion.ConversionProgress

BatchFileConversion.ConversionWorker - Class in clickDetector.offlineFuncs

BatchFileConversion.ConversionWorker() - Constructor for class clickDetector.offlineFuncs.BatchFileConversion.ConversionWorker

BAUD - Static variable in class portcomms.OpenCommPort

baud - Variable in class serialComms.SerialPortCom

baudData - Variable in class serialComms.SerialPortPanel

baudList - Variable in class serialComms.SerialPortPanel

BAUDRATE - Static variable in class angleMeasurement.FluxgateWorldAngles

bAutoScroll - Variable in class clickDetector.ClickDisplayManager

BeakedControl - Class in beakedWhaleProtocol

BeakedControl(String) - Constructor for class beakedWhaleProtocol.BeakedControl

beakedControl - Variable in class beakedWhaleProtocol.BeakedControl.VideoRangeMonitor

beakedControl - Variable in class beakedWhaleProtocol.BeakedDataBlock

beakedControl - Variable in class beakedWhaleProtocol.BeakedDialog

beakedControl - Variable in class beakedWhaleProtocol.BeakedExperimentGraphics

beakedControl - Variable in class beakedWhaleProtocol.BeakedGraphics

beakedControl - Variable in class beakedWhaleProtocol.BeakedLocationDialog

beakedControl - Variable in class beakedWhaleProtocol.BeakedLogging

beakedControl - Variable in class beakedWhaleProtocol.BeakedProcess

beakedControl - Variable in class beakedWhaleProtocol.BeakedSidePanel

beakedControl - Variable in class beakedWhaleProtocol.ShoreStationGraphics

BeakedControl.SettingsAction - Class in beakedWhaleProtocol

BeakedControl.SettingsAction(Frame) - Constructor for class beakedWhaleProtocol.BeakedControl.SettingsAction

BeakedControl.VideoRangeMonitor - Class in beakedWhaleProtocol

BeakedControl.VideoRangeMonitor(BeakedControl) - Constructor for class beakedWhaleProtocol.BeakedControl.VideoRangeMonitor

BeakedDataBlock - Class in beakedWhaleProtocol

BeakedDataBlock(String, BeakedProcess) - Constructor for class beakedWhaleProtocol.BeakedDataBlock

beakedDataBlock - Variable in class beakedWhaleProtocol.BeakedProcess

BeakedDataUnit - Class in beakedWhaleProtocol

BeakedDataUnit(long, BeakedLocationData) - Constructor for class beakedWhaleProtocol.BeakedDataUnit

BeakedDialog - Class in beakedWhaleProtocol

BeakedDialog(Frame) - Constructor for class beakedWhaleProtocol.BeakedDialog

BeakedDialog.MeasureAngles - Class in beakedWhaleProtocol

BeakedDialog.MeasureAngles() - Constructor for class beakedWhaleProtocol.BeakedDialog.MeasureAngles

BeakedDialog.MonitorVideo - Class in beakedWhaleProtocol

BeakedDialog.MonitorVideo() - Constructor for class beakedWhaleProtocol.BeakedDialog.MonitorVideo

BeakedDialog.ShowLine - Class in beakedWhaleProtocol

BeakedDialog.ShowLine() - Constructor for class beakedWhaleProtocol.BeakedDialog.ShowLine

BeakedExperimentData - Class in beakedWhaleProtocol

BeakedExperimentData(long) - Constructor for class beakedWhaleProtocol.BeakedExperimentData

BeakedExperimentDataBlock - Class in beakedWhaleProtocol

BeakedExperimentDataBlock(String, PamProcess) - Constructor for class beakedWhaleProtocol.BeakedExperimentDataBlock

beakedExperimentDataBlock - Variable in class beakedWhaleProtocol.BeakedExperimentLogging

beakedExperimentDataBlock - Variable in class beakedWhaleProtocol.BeakedProcess

BeakedExperimentGraphics - Class in beakedWhaleProtocol

BeakedExperimentGraphics(BeakedControl) - Constructor for class beakedWhaleProtocol.BeakedExperimentGraphics

BeakedExperimentLogging - Class in beakedWhaleProtocol

BeakedExperimentLogging(BeakedExperimentDataBlock) - Constructor for class beakedWhaleProtocol.BeakedExperimentLogging

BeakedGraphics - Class in beakedWhaleProtocol

Draws the beaked whale protocol graphics on the map

BeakedGraphics(BeakedControl) - Constructor for class beakedWhaleProtocol.BeakedGraphics

beakedLocationData - Variable in class beakedWhaleProtocol.BeakedDataUnit

BeakedLocationData - Class in beakedWhaleProtocol

BAsic ingormation on beaked whale location returned from BeakedLocationDialog

BeakedLocationData() - Constructor for class beakedWhaleProtocol.BeakedLocationData

beakedLocationData - Variable in class beakedWhaleProtocol.BeakedLocationDialog

BeakedLocationDialog - Class in beakedWhaleProtocol

BeakedLocationDialog() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog

BeakedLocationDialog.AutoAngle - Class in beakedWhaleProtocol

BeakedLocationDialog.AutoAngle() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog.AutoAngle

BeakedLocationDialog.CommentListener - Class in beakedWhaleProtocol

BeakedLocationDialog.CommentListener() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog.CommentListener

BeakedLocationDialog.DataEntryType - Class in beakedWhaleProtocol

BeakedLocationDialog.DataEntryType() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog.DataEntryType

BeakedLocationDialog.RBTyped - Class in beakedWhaleProtocol

BeakedLocationDialog.RBTyped() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog.RBTyped

BeakedLocationDialog.UpdateAngle - Class in beakedWhaleProtocol

BeakedLocationDialog.UpdateAngle() - Constructor for class beakedWhaleProtocol.BeakedLocationDialog.UpdateAngle

BeakedLogging - Class in beakedWhaleProtocol

BeakedLogging(BeakedControl, BeakedProcess) - Constructor for class beakedWhaleProtocol.BeakedLogging

beakedPanel - Variable in class beakedWhaleProtocol.BeakedSidePanel

beakedParameters - Variable in class beakedWhaleProtocol.BeakedControl

beakedParameters - Variable in class beakedWhaleProtocol.BeakedDialog

BeakedParameters - Class in beakedWhaleProtocol

BeakedParameters() - Constructor for class beakedWhaleProtocol.BeakedParameters

beakedProcess - Variable in class beakedWhaleProtocol.BeakedControl

beakedProcess - Variable in class beakedWhaleProtocol.BeakedDataBlock

beakedProcess - Variable in class beakedWhaleProtocol.BeakedLogging

BeakedProcess - Class in beakedWhaleProtocol

BeakedProcess(BeakedControl) - Constructor for class beakedWhaleProtocol.BeakedProcess

beakedSidePanel - Variable in class beakedWhaleProtocol.BeakedControl

BeakedSidePanel - Class in beakedWhaleProtocol

BeakedSidePanel(BeakedControl) - Constructor for class beakedWhaleProtocol.BeakedSidePanel

BeakedSidePanel.BeakedPanel - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel

BeakedSidePanel.BeakedPanel.EndAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.EndAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.EndAction

BeakedSidePanel.BeakedPanel.ForceStartAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.ForceStartAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.ForceStartAction

BeakedSidePanel.BeakedPanel.SetLocAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.SetLocAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.SetLocAction

BeakedSidePanel.BeakedPanel.SettingsAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.SettingsAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.SettingsAction

BeakedSidePanel.BeakedPanel.StartAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.StartAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.StartAction

BeakedSidePanel.BeakedPanel.SwapSidesAction - Class in beakedWhaleProtocol

BeakedSidePanel.BeakedPanel.SwapSidesAction() - Constructor for class beakedWhaleProtocol.BeakedSidePanel.BeakedPanel.SwapSidesAction

beakedWhaleDefaults() - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierSet

beakedWhaleProtocol - package beakedWhaleProtocol

bearing - Variable in class beakedWhaleProtocol.BeakedLocationData

bearing - Variable in class beakedWhaleProtocol.BeakedLocationDialog

bearing - Variable in class generalDatabase.PamDetectionLogging

BEARING - Static variable in class loc3d_Thode.StationQueue

bearing - Variable in class Localiser.DetectionGroupLocaliser

bearing - Variable in class Localiser.GroupDetection

bearing - Variable in class Map.MouseMeasureDisplay

bearing - Variable in class whistleDetector.WhistleLocalisation

bearing_f_Item - Variable in class loc3d_Thode.TowedArray3DSQLLogging

bearing_r_Item - Variable in class loc3d_Thode.TowedArray3DSQLLogging

bearingAmbiguity - Variable in class clickDetector.ClickLocalisation

bearingAmbiguity() - Method in class clickDetector.ClickLocalisation

bearingAmbiguity() - Method in class clickDetector.ClickTrainLocalisation

bearingAmbiguity - Variable in class generalDatabase.PamDetectionLogging

bearingAmbiguity() - Method in class loc3d_Thode.TowedArray3DLocalization

bearingAmbiguity() - Method in class Localiser.GroupDetectionLocalisation

bearingAmbiguity() - Method in class PamDetection.AbstractLocalisation

bearingAmbiguity() - Method in class whistleDetector.WhistleLocalisation

bearingAmbiguity() - Method in class whistlesAndMoans.WhistleBearingInfo

bearingError - Variable in class generalDatabase.PamDetectionLogging

bearingLocaliser - Variable in class clickDetector.ClickDetector.ChannelGroupDetector

BearingLocaliser - Interface in Localiser

Class to estimate bearings, with errors from a closely spaced hydrophone array

bearingLocaliser - Variable in class whistlesAndMoans.WhistleToneConnectProcess.ShapeConnector

BearingLocaliserSelector - Class in Localiser

Class to automatically select / create the most appropriate type of bearing localiser.

BearingLocaliserSelector() - Constructor for class Localiser.BearingLocaliserSelector

bearingRef - Variable in class whistlesAndMoans.WhistleBearingInfo

bearingTo(LatLong) - Method in class PamUtils.LatLong

bearingToReference() - Method in class landMarks.LandmarkData

bearingTox(double, double) - Method in class videoRangePanel.VRPanel.InnerPanel

bearoffset - Variable in class ishmaelComms.Client

bearoffset - Variable in class ishmaelComms.IshmaelData

BEFORE_FIRST - Static variable in class dataMap.OfflineDataMap

beforeFirst() - Method in class generalDatabase.pamCursor.NonScrollablePamCursor

beforeFirst() - Method in class generalDatabase.pamCursor.PamCursor

beforeFirst() - Method in class generalDatabase.pamCursor.ScrollablePamCursor

BELOW_RIGHT - Static variable in class Layout.PamAxis

bestNum - Variable in class clickDetector.offlineFuncs.OfflineEventDialog

bestNumber - Variable in class clickDetector.offlineFuncs.OfflineEventDataUnit

Best estimate of number of animals in event

bestNumber - Variable in class clickDetector.offlineFuncs.OfflineEventLogging

BetterPDProvider - Class in whistleDetector

BetterPDProvider() - Constructor for class whistleDetector.BetterPDProvider

BetterPeakDetector - Class in whistleDetector

BetterPeakDetector(WhistleControl, WhistleDetector, FFTDataBlock, int) - Constructor for class whistleDetector.BetterPeakDetector

bgImage - Variable in class Spectrogram.ScalePanel

bgndUpdate0 - Variable in class whistleDetector.PeakDetector

bgndUpdate0_1 - Variable in class whistleDetector.PeakDetector

bgndUpdate1 - Variable in class whistleDetector.PeakDetector

bgndUpdate1_1 - Variable in class whistleDetector.PeakDetector

bgTC0 - Variable in class EdgeDetector.EdgeParameters

bgTC1 - Variable in class EdgeDetector.EdgeParameters

bigStep - Variable in class videoRangePanel.ImageAnglePanel

bin - Variable in class ishmaelComms.Client

bin - Variable in class ishmaelComms.ProcessIshmaelData.Client

bin1 - Variable in class seismicVeto.VetoProcess

bin1 - Variable in class WorkshopDemo.WorkshopProcess

Frequency bins for energy summation.

bin2 - Variable in class seismicVeto.VetoProcess

bin2 - Variable in class WorkshopDemo.WorkshopProcess

Frequency bins for energy summation.

BINARY_FILE_NAME_LENGTH - Static variable in class clickDetector.offlineFuncs.OfflineClickLogging

binaryColour - Variable in class dataMap.DataStreamPanel

BinaryDataSource - Class in binaryFileStorage

Not just a source, but also a sink for binary data from the binary store.

BinaryDataSource(PamDataBlock) - Constructor for class binaryFileStorage.BinaryDataSource

binaryDataSource - Variable in class binaryFileStorage.BinaryOfflineDataMap

binaryDataSource - Variable in class binaryFileStorage.BinaryOutputStream

binaryDataSource - Variable in class PamguardMVC.PamDataBlock

binaryFile - Variable in class binaryFileStorage.BinaryOfflineDataMapPoint

binaryFile - Variable in class clickDetector.offlineFuncs.OfflineClickLogging

BinaryFileMatcher - Class in PamguardMVC

Match data based on binary file information.

BinaryFileMatcher() - Constructor for class PamguardMVC.BinaryFileMatcher

binaryFileStorage - package binaryFileStorage

BinaryFooter - Class in binaryFileStorage

BinaryFooter(long, long, int, long) - Constructor for class binaryFileStorage.BinaryFooter

BinaryFooter() - Constructor for class binaryFileStorage.BinaryFooter

binaryFooter - Variable in class binaryFileStorage.BinaryHeaderAndFooter

binaryFooter - Variable in class binaryFileStorage.BinaryInputStream

binaryFooter - Variable in class binaryFileStorage.BinaryOfflineDataMapPoint

BinaryHeader - Class in binaryFileStorage

BinaryHeader(String, String, String) - Constructor for class binaryFileStorage.BinaryHeader

BinaryHeader() - Constructor for class binaryFileStorage.BinaryHeader

binaryHeader - Variable in class binaryFileStorage.BinaryHeaderAndFooter

binaryHeader - Variable in class binaryFileStorage.BinaryOfflineDataMapPoint

BinaryHeaderAndFooter - Class in binaryFileStorage

BinaryHeaderAndFooter() - Constructor for class binaryFileStorage.BinaryHeaderAndFooter

BinaryInputStream - Class in binaryFileStorage

Used to read data back from a binary data file and either send it off to the associated PamDataBlock or hand it back to the BinaryStore controller, e.g.

BinaryInputStream(BinaryStore, PamDataBlock) - Constructor for class binaryFileStorage.BinaryInputStream

binaryMapDialog - Variable in class binaryFileStorage.BinaryStore

BinaryMapMakeProgress - Class in binaryFileStorage

BinaryMapMakeProgress(int, String, int, int) - Constructor for class binaryFileStorage.BinaryMapMakeProgress

BinaryMapMakingDialog - Class in binaryFileStorage

Not really a dialog, but displayed by BinaryStore while its making maps of stored data during Viewer operation.

BinaryMapMakingDialog(Window) - Constructor for class binaryFileStorage.BinaryMapMakingDialog

BinaryObjectData - Class in binaryFileStorage

Class to temporarily hold an objected data that has just been read from a binary file.

BinaryObjectData(int, byte[], int) - Constructor for class binaryFileStorage.BinaryObjectData

BinaryObjectData(int, long, int, byte[], int) - Constructor for class binaryFileStorage.BinaryObjectData

BinaryOfflineDataMap - Class in binaryFileStorage

BinaryOfflineDataMap(BinaryStore, PamDataBlock) - Constructor for class binaryFileStorage.BinaryOfflineDataMap

BinaryOfflineDataMapPoint - Class in binaryFileStorage

BinaryOfflineDataMapPoint(File, BinaryHeader, BinaryFooter, ModuleHeader, ModuleFooter) - Constructor for class binaryFileStorage.BinaryOfflineDataMapPoint

BinaryOutputStream - Class in binaryFileStorage

Handles writing of an actual binary data file.

BinaryOutputStream(BinaryStore, PamDataBlock) - Constructor for class binaryFileStorage.BinaryOutputStream

BinarySettingsStorage - Class in binaryFileStorage

Manage storage and retrieval of PAMGUARD serialised settings storage in binary files.

BinarySettingsStorage(BinaryStore) - Constructor for class binaryFileStorage.BinarySettingsStorage

binarySettingsStorage - Variable in class binaryFileStorage.BinaryStore

BinaryStorageDialog - Class in binaryFileStorage

BinaryStorageDialog(Window) - Constructor for class binaryFileStorage.BinaryStorageDialog

binaryStorageDialogPanel - Variable in class binaryFileStorage.BinaryStorageDialog

BinaryStorageDialogPanel - Class in binaryFileStorage

BinaryStorageDialogPanel(Window) - Constructor for class binaryFileStorage.BinaryStorageDialogPanel

binaryStorageDialogPanel - Variable in class clickDetector.offlineFuncs.BatchFileConversion

BinaryStorageDialogPanel.ChangeAction - Class in binaryFileStorage

BinaryStorageDialogPanel.ChangeAction() - Constructor for class binaryFileStorage.BinaryStorageDialogPanel.ChangeAction

binaryStorageStream - Variable in class binaryFileStorage.BinaryDataSource

binaryStore - Variable in class binaryFileStorage.BinaryInputStream

binaryStore - Variable in class binaryFileStorage.BinaryOfflineDataMap

binaryStore - Variable in class binaryFileStorage.BinaryOutputStream

binaryStore - Variable in class binaryFileStorage.BinarySettingsStorage

BinaryStore - Class in binaryFileStorage

The binary store will work very much like the database in that it monitors the output of data streams and when data is added to them it writes it to the binary store.

BinaryStore(String) - Constructor for class binaryFileStorage.BinaryStore

binaryStore - Variable in class binaryFileStorage.BinaryStoreProcess

binaryStore - Variable in class clickDetector.offlineFuncs.BatchFileConversion

BinaryStore.BinaryDataMapMaker - Class in binaryFileStorage

BinaryStore.BinaryDataMapMaker() - Constructor for class binaryFileStorage.BinaryStore.BinaryDataMapMaker

BinaryStore.BinaryStorageOptions - Class in binaryFileStorage

BinaryStore.BinaryStorageOptions(JFrame) - Constructor for class binaryFileStorage.BinaryStore.BinaryStorageOptions

BinaryStore.NewFileTask - Class in binaryFileStorage

BinaryStore.NewFileTask() - Constructor for class binaryFileStorage.BinaryStore.NewFileTask

BinaryStore.StoredUnitServer - Class in binaryFileStorage

Class to serve up the next data unit that needs to be stored from a particular file.

BinaryStore.StoredUnitServer(File, PamDataBlock) - Constructor for class binaryFileStorage.BinaryStore.StoredUnitServer

binaryStoreProcess - Variable in class binaryFileStorage.BinaryStore

BinaryStoreProcess - Class in binaryFileStorage

BinaryStoreProcess(BinaryStore) - Constructor for class binaryFileStorage.BinaryStoreProcess

BinaryStoreProcess.FileTimerTask - Class in binaryFileStorage

BinaryStoreProcess.FileTimerTask() - Constructor for class binaryFileStorage.BinaryStoreProcess.FileTimerTask

binaryStoreSettings - Variable in class binaryFileStorage.BinaryStorageDialog

binaryStoreSettings - Variable in class binaryFileStorage.BinaryStore

BinaryStoreSettings - Class in binaryFileStorage

BinaryStoreSettings() - Constructor for class binaryFileStorage.BinaryStoreSettings

binaryStoreSettings - Variable in class clickDetector.offlineFuncs.BatchFileConversion

BinaryTypes - Class in binaryFileStorage

BinaryTypes() - Constructor for class binaryFileStorage.BinaryTypes

binCentres - Variable in class pamMaths.PamHistogram

binCentres - Variable in class pamMaths.PamHistogram2

binOffset - Variable in class IshmaelDetector.SgramCorrProcess

binsAxis - Variable in class clickDetector.ClickWaveform

binsToHz(int) - Method in class whistleDetector.WhistleDetector

Convert a number of frequency bins in the spectrgram matrix to a frequency in Hz.

binsToHz(double) - Method in class whistlesAndMoans.AbstractWhistleDataBlock

binsToHz(double) - Method in class whitesWhistleDetector.AbstractWhistleDataBlock

binsToSeconds(int) - Method in class whistleDetector.WhistleDetector

Convert a number of time bins in the spectrgram matris to a a time in seconds

binsToSeconds(double) - Method in class whistlesAndMoans.AbstractWhistleDataBlock

binsToSeconds(double) - Method in class whitesWhistleDetector.AbstractWhistleDataBlock

BinToX(int) - Method in class clickDetector.ClickTrigger

BIP10VOLTS - Static variable in class mcc.MccJniInterface

BIP1PT25VOLTS - Static variable in class mcc.MccJniInterface

BIP1PT67VOLTS - Static variable in class mcc.MccJniInterface

BIP1VOLTS - Static variable in class mcc.MccJniInterface

BIP20VOLTS - Static variable in class mcc.MccJniInterface

BIP2PT5VOLTS - Static variable in class mcc.MccJniInterface

BIP2VOLTS - Static variable in class mcc.MccJniInterface

BIP4VOLTS - Static variable in class mcc.MccJniInterface

BIP5VOLTS - Static variable in class mcc.MccJniInterface

bipolarRanges - Static variable in class mcc.MccJniInterface

BIPPT005VOLTS - Static variable in class mcc.MccJniInterface

BIPPT01VOLTS - Static variable in class mcc.MccJniInterface

BIPPT05VOLTS - Static variable in class mcc.MccJniInterface

BIPPT1VOLTS - Static variable in class mcc.MccJniInterface

BIPPT25VOLTS - Static variable in class mcc.MccJniInterface

BIPPT2VOLTS - Static variable in class mcc.MccJniInterface

BIPPT5VOLTS - Static variable in class mcc.MccJniInterface

BIPPT625VOLTS - Static variable in class mcc.MccJniInterface

bitData - Variable in class AIS.AISDataUnit

bitDepth - Variable in class SoundRecorder.PamAudioFileStorage

bitDepth - Variable in class SoundRecorder.RecorderSettings

bit depth (NOT Byte depth) of the recording format.

BITS_PER_SECOND_LIST - Static variable in class portcomms.OpenCommPort

bitsList - Variable in class serialComms.SerialPortPanel

bitsPerSample - Variable in class wavFiles.WavHeader

bitsPerSamples - Variable in class Acquisition.WavHeader

bitsPerSecond - Variable in class portcomms.SerialPortParameters

bitsPerSecondComboBox - Variable in class NMEA.NMEAParametersDialog

bitsPerSecondComboBox - Variable in class terrella.SerialParametersDialogPanel

bitsPerSecondLabel - Variable in class terrella.SerialParametersDialogPanel

bitsPerSecondList - Variable in class NMEA.NMEAParametersDialog

BLACKMAN - Static variable in class Spectrogram.WindowFunction

blackman(int) - Static method in class Spectrogram.WindowFunction

BLACKMANHARRIS - Static variable in class Spectrogram.WindowFunction

blackmanharris(int) - Static method in class Spectrogram.WindowFunction

block - Variable in class likelihoodDetectionModule.LikelihoodFFTController

The block of raw acoustic data that the extra fft processes will need to subscribe to.

BLOCK_COUNT - Static variable in class generalDatabase.CreateMapInfo

blockAlign - Variable in class Acquisition.WavHeader

blockAlign - Variable in class wavFiles.WavHeader

blockCounter - Variable in class Map.GetMapFile

blockDuration - Variable in class clickDetector.ClickDetector

blockNum - Variable in class PamUtils.MapContourValues

blockSamples - Variable in class Acquisition.FileInputSystem

blocksProcessed - Variable in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage

blockStartSample - Variable in class clickDetector.ClickDetector

blockTimer - Variable in class PamView.PamObjectViewer.PamControllerView

blockTimer - Variable in class PamView.PamObjectViewer.PamProcessView

BlockTimeStamp - Class in likelihoodDetectionModule.normalizer

This is a convenience class which stores the critical non-static information about the data blocks being processed.

BlockTimeStamp(long, int, long, long, int) - Constructor for class likelihoodDetectionModule.normalizer.BlockTimeStamp

blockTimeStamps - Variable in class likelihoodDetectionModule.normalizer.SplitWindowNorm

boardList - Variable in class depthReadout.MccDialog.BoardPanel

boardList - Variable in class mcc.MccJniInterface

boardPanel - Variable in class depthReadout.MccDialog

bodeGraph - Variable in class Filters.FilterDialog

bodePlot - Variable in class Filters.FilterDialog

boldFont - Static variable in class PamView.PamColors

bootsRunnable - Variable in class whistleClassifier.training.ClassifierTrainer

bootstrapThread - Variable in class whistleClassifier.training.ClassifierTrainer

border - Variable in class eventCounter.EventCounterSidePanel

border - Variable in class Layout.PamAxisPanel

border - Variable in class Map.MouseMeasureDisplay

border - Static variable in class PamUtils.Splash

border - Variable in class PamView.PamBorderPanel

borderColour - Variable in class generalDatabase.lookupTables.LookupItem

borderColourItem - Variable in class generalDatabase.lookupTables.LookUpTables

borderLabel - Variable in class PamUtils.SelectFolder

borderTitle - Variable in class PamView.SourcePanel

bos - Variable in class AIS.AISBinaryDataSource

bos - Variable in class clickDetector.ClickBinaryDataSource

bos - Variable in class noiseMonitor.NoiseBinaryDataSource

bos - Variable in class whistlesAndMoans.WhistleBinaryDataSource

BOTH_SIDES - Static variable in class Layout.PamAxis

bottomBorder - Variable in class Spectrogram.ScalePanel

boundingRectangle - Variable in class userDisplay.UserFrameParameters

bounds - Variable in class PamView.GuiParameters

boundsRect - Variable in class Filters.FilterDialog.BodeGraph

bow - Variable in class GPS.ShipDimensionsDrawing

boxLayout - Variable in class dataMap.ScrollingDataPanel

branch - Variable in class simulatedAcquisition.BranchedChirp

branch(int) - Method in class whistlesAndMoans.RejoiningFragmenter

BranchedChirp - Class in simulatedAcquisition

BranchedChirp(double, double, double, double, double, double) - Constructor for class simulatedAcquisition.BranchedChirp

breakShortBridges() - Method in class whistlesAndMoans.ConnectedRegion

Break short bridges in time.

brightness - Variable in class videoRangePanel.VRPanel

brightness - Variable in class videoRangePanel.VRSidePanel.VRPanel

browseButton - Variable in class generalDatabase.MSAccessDialogPanel

browseButton - Variable in class Map.MapParametersDialog.FilePanel

browseButton - Variable in class PamController.SettingsFileDialog

browseButton - Variable in class PamUtils.SelectFolder

browseButton - Variable in class videoRangePanel.VRParametersDialog.ShorePanel

browseDatabases(Component) - Method in class generalDatabase.DBControl

browseDatabases(Component) - Method in class generalDatabase.DBSystem

browseDatabases(Component) - Method in class generalDatabase.MSAccessSystem

browseDatabases(Component) - Method in class generalDatabase.MySQLSystem

browseDirectories() - Method in class clickDetector.dialogs.ClickStorageOptionsDialog

browseDirectories() - Method in class PamUtils.SelectFolder.FolderPanel

browseDirectory - Variable in class clickDetector.dialogs.ClickStorageOptionsDialog

browseForFiles() - Method in class PamController.SettingsFileDialog

browseMaps() - Method in class Map.MapParametersDialog.FilePanel

btAxis - Variable in class clickDetector.ClickBTDisplay

btDisplay - Variable in class clickDetector.offlineFuncs.ClicksOffline.LabelClick

btDisplay - Variable in class clickDetector.offlineFuncs.ClicksOffline.LabelClicks

btDisplay - Variable in class clickDetector.offlineFuncs.LabelClicksDialog

BTDisplayParameters - Class in clickDetector

BTDisplayParameters() - Constructor for class clickDetector.BTDisplayParameters

btDisplayParameters - Variable in class clickDetector.ClickBTDisplay

btDisplayParameters - Variable in class clickDetector.dialogs.ClickDisplayDialog

btPanel - Variable in class clickDetector.dialogs.ClickDisplayDialog

btPlot - Variable in class clickDetector.ClickBTDisplay

bubble(double[], int, int[]) - Method in class whistlesAndMoans.MedianFilter

Bubble sort.

bubble(double[], int, int[]) - Method in class whitesWhistleDetector.MedianFilter

Bubble sort.

buffer - Variable in class IshmaelDetector.MatchFiltProcess

BUFFER_SIZE - Static variable in class ipcomms.Producer

bufferContent - Variable in class SoundRecorder.RecorderTabPanel

bufferedClipRectangle - Variable in class PamView.ScrollableBufferedImage

bufferedImage - Variable in class PamView.JBufferedPanel

bufferLength - Variable in class SoundRecorder.RecorderSettings

Lenght of the buffered data to store

bufferLength - Variable in class SoundRecorder.RecorderSettingsDialog.BufferPanel

bufferLength - Variable in class SoundRecorder.RecorderTabPanel

bufferOverflow - Variable in class Acquisition.AcquisitionProcess

bufferPanel - Variable in class SoundRecorder.RecorderSettingsDialog

BUFFERSECONDS - Static variable in class nidaqdev.Nidaq

bufferTimer - Variable in class Acquisition.AcquisitionProcess

bufI - Variable in class IshmaelDetector.MatchFiltProcess

buildDatabaseUrl(String, int, String) - Method in class generalDatabase.MySQLSystem

buildDetectors() - Method in class whistleDetector.WhistleDetector

buildList() - Method in class Spectrogram.SpectrogramParamsDialog.ObserverPanel

buildList() - Method in class Spectrogram.SpectrogramParamsDialog.PluginPanel

buildMasterHelpset() - Method in class PamView.PamHelp

Called from constructor to create the panels for the help frame.

buildUiPanel() - Method in class UserInput.UserInputPanel

BusyLayeredPane - Class in PamView

BusyLayeredPane(JLayeredPane) - Constructor for class PamView.BusyLayeredPane

busyPane - Variable in class PamView.PamGui

ButterworthFilter - Class in Filters

ButterworthFilter(double) - Constructor for class Filters.ButterworthFilter

BUTTON_AUTO - Static variable in interface SoundRecorder.RecorderView

BUTTON_OFF - Static variable in interface SoundRecorder.RecorderView

BUTTON_START - Static variable in interface SoundRecorder.RecorderView

BUTTON_START_BUFFERED - Static variable in interface SoundRecorder.RecorderView

buttonAuto - Variable in class SoundRecorder.RecorderSidePanel

buttonAuto - Variable in class SoundRecorder.RecorderTabPanel

buttonBar - Variable in class PamView.PamHelp

buttonCommand(int) - Method in class SoundRecorder.RecorderControl

buttonCommand - Variable in class SoundRecorder.RecorderSidePanel.MainButtonListener

buttonCommand - Variable in class SoundRecorder.RecorderTabPanel.RecorderPanel.MainButtonListener

buttonOff - Variable in class SoundRecorder.RecorderSidePanel

buttonOff - Variable in class SoundRecorder.RecorderTabPanel

buttonPanel - Variable in class noiseMonitor.NoiseTabPanel.DataSelectionPanel

buttonPanel - Variable in class pamScrollSystem.AbstractPamScroller

buttonPanel - Variable in class PamView.PamDialog

buttonPress(int, int, int, String) - Method in class listening.ListeningControl

buttonPress(int, int, int, String) - Method in class listening.ListeningProcess

buttonsChanged() - Method in class patchPanel.PatchPanelDialog

buttonSettings - Variable in class SoundRecorder.RecorderTabPanel

buttonsPanel - Variable in class listening.ThingHeardTabPanelControl

buttonStart - Variable in class SoundRecorder.RecorderSidePanel

buttonStart - Variable in class SoundRecorder.RecorderTabPanel

buttonStartBuffered - Variable in class SoundRecorder.RecorderSidePanel

buttonStartBuffered - Variable in class SoundRecorder.RecorderTabPanel

byteBuffer - Variable in class PamController.NetworkController

byteBuffer - Variable in class SoundRecorder.PamAudioFileStorage

byteConverter - Variable in class Acquisition.FileInputSystem

byteConverter - Variable in class Acquisition.offlineFuncs.OfflineFileServer

ByteConverter - Class in wavFiles

Classes to convert between various wav and aif stream formats and double data scaled from -1 to +1 for PAMGUARD.

ByteConverter() - Constructor for class wavFiles.ByteConverter

ByteConverterAifInt16 - Class in wavFiles

ByteConverterAifInt16() - Constructor for class wavFiles.ByteConverterAifInt16

ByteConverterAifInt24 - Class in wavFiles

ByteConverterAifInt24() - Constructor for class wavFiles.ByteConverterAifInt24

ByteConverterAifInt32 - Class in wavFiles

ByteConverterAifInt32() - Constructor for class wavFiles.ByteConverterAifInt32

ByteConverterAifInt8 - Class in wavFiles

ByteConverterAifInt8() - Constructor for class wavFiles.ByteConverterAifInt8

ByteConverterWavInt16 - Class in wavFiles

ByteConverterWavInt16() - Constructor for class wavFiles.ByteConverterWavInt16

ByteConverterWavInt24 - Class in wavFiles

ByteConverterWavInt24() - Constructor for class wavFiles.ByteConverterWavInt24

ByteConverterWavInt32 - Class in wavFiles

ByteConverterWavInt32() - Constructor for class wavFiles.ByteConverterWavInt32

ByteConverterWavInt8 - Class in wavFiles

ByteConverterWavInt8() - Constructor for class wavFiles.ByteConverterWavInt8

byteData - Variable in class PamUtils.Ascii6Bit

byteRate - Variable in class Acquisition.WavHeader

bytes - Variable in class clickDetector.WindowsBuffer

bytesPerSamples - Static variable in class clickDetector.ClickBinaryDataSource

bytesPerSec - Variable in class wavFiles.WavHeader

bytesPerSecond - Variable in class ipcomms.Consumer

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverter

Converts a byte array into a double array.

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterAifInt16

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterAifInt24

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterAifInt32

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterAifInt8

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterWavInt16

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterWavInt24

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterWavInt32

bytesToDouble(byte[], double[][], int) - Method in class wavFiles.ByteConverterWavInt8

bytesToSamples(byte[], long, int, AudioFormat) - Static method in class Acquisition.FileInputSystem

Format one channel of the data in a byte array into a sample array.