Package group3dlocaliser.algorithm.toadmimplex

Class ToadMimplexLocaliser

java.lang.Object

group3dlocaliser.algorithm.LocaliserAlgorithm3D

group3dlocaliser.algorithm.toadbase.TOADBaseAlgorithm

group3dlocaliser.algorithm.toadmcmc.ToadMCMCLocaliser

group3dlocaliser.algorithm.toadmimplex.ToadMimplexLocaliser

All Implemented Interfaces:

LocaliserModel<PamDataUnit>

public class ToadMimplexLocaliser
extends ToadMCMCLocaliser

The Mimplex localiser is similar to MCMC but it localises multiple possible combinations using fast algorithms then uses MCMC to localiser the final combination.

Author:

Jamie Macaulay

Nested Class Summary

Nested classes/interfaces inherited from class group3dlocaliser.algorithm.toadbase.TOADBaseAlgorithm

TOADBaseAlgorithm.MultiVariateType

Field Summary

Fields inherited from class group3dlocaliser.algorithm.toadbase.TOADBaseAlgorithm

group3dLocaliser

Constructor Summary

Constructors

Constructor	Description
ToadMimplexLocaliser(Group3DLocaliserControl group3dLocaliser)

Method Summary

Modifier and Type	Method	Description
LocaliserPane	getAlgorithmSettingsPane()	Get an algorithm specific settings pane.
String	getName()	Get the name which describes the localiser.
String	getToolTipText()
DetectionGroupedSet	preFilterLoc(DetectionGroupedSet preGroups)	Option to pre-filter the localisation results.
boolean	prepare(PamDataBlock sourceBlock)

Methods inherited from class group3dlocaliser.algorithm.toadmcmc.ToadMCMCLocaliser

getLocContents, getSQLLoggingAddon, hasParams, notifyModelProgress, processTOADs

Methods inherited from class group3dlocaliser.algorithm.toadbase.TOADBaseAlgorithm

calcChi2, calcLogLikelihood, canLocalise, checkTOADInformation, countUsableTOADS, countUsableTOADS, estimateCartesianError, estimateEllipticalError, getSourceSettingsPane, getToadBaseParams, runModel

Methods inherited from class group3dlocaliser.algorithm.LocaliserAlgorithm3D

canArrayShape, getGroupChannelMap, setLocaliserParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ToadMimplexLocaliser

public ToadMimplexLocaliser(Group3DLocaliserControl group3dLocaliser)

Method Details

getName

public String getName()

Description copied from interface: LocaliserModel

Get the name which describes the localiser.

Specified by:

getName in interface LocaliserModel<PamDataUnit>

Overrides:

getName in class ToadMCMCLocaliser

Returns:

the name of the localiser.

getToolTipText

public String getToolTipText()

Specified by:

getToolTipText in interface LocaliserModel<PamDataUnit>

Overrides:

getToolTipText in class ToadMCMCLocaliser

prepare

public boolean prepare(PamDataBlock sourceBlock)

Overrides:

prepare in class TOADBaseAlgorithm

preFilterLoc

public DetectionGroupedSet preFilterLoc(DetectionGroupedSet preGroups)

Option to pre-filter the localisation results. This can be useful when using algorithms that internally handle detection match uncertainty.

Overrides:

preFilterLoc in class ToadMCMCLocaliser

getAlgorithmSettingsPane

public LocaliserPane getAlgorithmSettingsPane()

Description copied from class: LocaliserAlgorithm3D

Get an algorithm specific settings pane. This holds settings which are specific to the localisation algorithm.

Specified by:

getAlgorithmSettingsPane in interface LocaliserModel<PamDataUnit>

Overrides:

getAlgorithmSettingsPane in class ToadMCMCLocaliser

Returns:

the settings pane for the localiser.