Package PamguardMVC.superdet

Class SuperDetection<T extends PamDataUnit>

java.lang.Object

PamguardMVC.PamDataUnit<T,SuperDetection>

PamguardMVC.superdet.SuperDetection<T>

Type Parameters:

T -

All Implemented Interfaces:

Comparable<PamDataUnit>

Direct Known Subclasses:

CBDetectionMatcher.CBMatchGroup, DetectionGroupDataUnit, EventDataUnit, Group3DDataUnit, GroupDetDataUnit, GroupDetection, IshAnchorGroup, MarkGroupDataUnit, QADataUnit

public class SuperDetection<T extends PamDataUnit>
extends PamDataUnit<T,SuperDetection>

Class added to a PAMDataunit which can be a SuperDetection. Pretty much contains functionality which was previously in every data unit, but now only in designated super detections implementing the SuperDetection interface.

A Major change now taking place is that the list of SubdetectionInfo's in viewer mode now contains all infos for the data unit, regardless of whether their actual data unit is there or not. Separating out the infos from the dataunit gives much better control over how superdetection data are handled.

Author:

Doug Gillespie

Field Summary

Fields inherited from class PamguardMVC.PamDataUnit

absBlockIndex, localisation

Constructor Summary

Constructors

Constructor	Description
SuperDetection(long timeMilliseconds)
SuperDetection(long timeMilliseconds, int channelBitmap, long startSample, long durationSamples)
SuperDetection(DataUnitBaseData basicData)

Method Summary

Modifier and Type	Method	Description
int	addSubDetection(T subDetection)	Add a sub detection to the sub detection list.
void	addSubDetectionInfo(SubdetectionInfo<T> subDetInfo)
int	addSubDetections(List<T> newSubDets)	Add multiple sub detections from a list.
void	clearSubDetectionData()	Clears all sub detection data.
void	clearSubDetectionObjects()	Clears actual detections from the sub detection data.
void	clearSubdetectionsRemoved()	clears the list of subdetections that have been removed
T	findSubDetection(long UID)	Find a subdetection with a specific UID
T	findSubDetection(long timeMillis, int channelBitmap)	find a sub detection based on it's time and it's channel map
T	findSubDetection(long timeMillis, int channelBitmap, Class dataClass)	Find a sub detection with a specific time, channel map and data unit class.
int	findSubdetectionInfo(T subToFind)	Returns the index of the SubdetectionInfo object containing the passed subdetection
int	findSubDetectionInfo(SubdetectionInfo otherInfo)	find a sub detection info that has the same times, id's etc.
int	getLoadedSubDetectionsCount()	Get the number of sub detections that are actually in memory.
List<SubdetectionInfo<T>>	getPresentSubDetections()	Get a list of sub detections which are actually present.
T	getSubDetection(int ind)
SubdetectionInfo	getSubdetectionInfo(int idx)	Get sub detection info at a specified index.
Vector<SubdetectionInfo<T>>	getSubDetectionInfo()	Get the full list of subdetection info's (which may not all have a sub detection in memory)
ArrayList<PamDataUnit<?,?>>	getSubDetections()	Get a basic list of sub detections without their associated info This may not be ALL of the sub detections, since they may not all be loaded.
int	getSubDetectionsCount()	Get the number of sub detections in the super detection.
ArrayList<SubdetectionInfo<T>>	getSubdetectionsRemoved()	returns a list of the database indices of all subdetections that have been removed
Object	getSubDetectionSyncronisation()
boolean	isAllowSubdetectionSharing()
void	removeAllSubDetections()	Remove all sub detection information.
void	removeSubDetection(T subDetection)	Remove a sub detection from the data unit.
void	replaceSubDetection(T oldOne, T newOne)	Replace a sub detection in an event.
void	sortSubDetections()	Sorts sub detections into order.

Methods inherited from class PamguardMVC.PamDataUnit

addDataAnnotation, addSuperDetection, amplifyMeasuredAmplitudeByDB, amplifyMeasuredAmplitudeByLinear, calcSnapshotGeometry, clearOandAngles, clearUpdateCount, compareTo, findDataAnnotation, findDataAnnotation, freeData, getAbsBlockIndex, getAmplitudeDB, getAnnotationsSummaryString, getBasicData, getCalculatedAmlitudeDB, getChannelBitmap, getColourIndex, getDataAnnotation, getDatabaseIndex, getDatabaseUpdateOf, getDataUnitFileInformation, getDataUnitPopupMenu, getDurationInMilliseconds, getEndTimeInMilliseconds, getFrequency, getFrequencyOverlap, getGpsPosition, getHydrophoneBitmap, getHydrophoneHeading, getLastChangeTime, getLastSample, getLastUpdateTime, getLocalisation, getMeasuredAmplitude, getMeasuredAmplitudeType, getNoiseBackground, getNumDataAnnotations, getOriginLatLong, getParentDataBlock, getSampleDuration, getSampleDurationAsInt, getSeconds, getSequenceBitmap, getSequenceBitmapObject, getSignalExcess, getSignalSPL, getSnapshotGeometry, getStartSample, getSummaryString, getSuperDetection, getSuperDetection, getSuperDetection, getSuperDetection, getSuperDetection, getSuperDetectionsCount, getSuperDetectionSyncronisation, getSuperId, getTimeDelaysSeconds, getTimeMilliseconds, getTimeNanoseconds, getTimeOverlap, getUID, getUpdateCount, isEmbryonic, isForceAmpRecalc, linAmplitudeToDB, removeDataAnnotation, removeDataAnnotation, removeSuperDetection, setAbsBlockIndex, setCalculatedAmlitudeDB, setChannelBitmap, setDatabaseIndex, setDatabaseUpdateOf, setDataUnitFileInformation, setDurationInMilliseconds, setEmbryonic, setForceAmpRecalc, setFrequency, setInfo, setLastUpdateTime, setLocalisation, setMeasuredAmpAndType, setMeasuredAmplitude, setMeasuredAmplitudeType, setNoiseBackground, setParentDataBlock, setSampleDuration, setSequenceBitmap, setSignalExcess, setSignalSPL, setSnapshotGeometry, setStartSample, setTimeDelaysSeconds, setTimeMilliseconds, setUID, setUniqueSuperDetection, sortOutputMaps, updateDataUnit

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SuperDetection

public SuperDetection(DataUnitBaseData basicData)

SuperDetection

public SuperDetection(long timeMilliseconds,
 int channelBitmap,
 long startSample,
 long durationSamples)

SuperDetection

public SuperDetection(long timeMilliseconds)

Method Details

getSubDetectionSyncronisation

public Object getSubDetectionSyncronisation()

isAllowSubdetectionSharing

public boolean isAllowSubdetectionSharing()

addSubDetections

public int addSubDetections(List<T> newSubDets)

Add multiple sub detections from a list.

Parameters:

newSubDets - List of new sub detections

Returns:

total number of sub detections now in the super detection

addSubDetection

public int addSubDetection(T subDetection)

Add a sub detection to the sub detection list.

Parameters:

subDetection - - the sub detection to add.

Returns:

- the total number of sub detections now in the list. .

sortSubDetections

public void sortSubDetections()

Sorts sub detections into order. Uses the inbuilt comparator which compares the millisecond times of data units.

findSubdetectionInfo

public int findSubdetectionInfo(T subToFind)

Returns the index of the SubdetectionInfo object containing the passed subdetection

Parameters:

subToFind - the subdetection to find

Returns:

index position, or -1 if the subdetection wasn't found

findSubDetectionInfo

public int findSubDetectionInfo(SubdetectionInfo otherInfo)

find a sub detection info that has the same times, id's etc.

Parameters:

otherInfo -

Returns:

index of found item, or -1

getSubDetectionsCount

public int getSubDetectionsCount()

Get the number of sub detections in the super detection. note that they may not all be loaded in memory.

Returns:

Number of sub detections.

getLoadedSubDetectionsCount

public int getLoadedSubDetectionsCount()

Get the number of sub detections that are actually in memory.

Returns:

number of subdets linked in memory

getSubDetections

public ArrayList<PamDataUnit<?,?>> getSubDetections()

Get a basic list of sub detections without their associated info This may not be ALL of the sub detections, since they may not all be loaded.

Returns:

an array list of sub detection data units

getSubDetection

public T getSubDetection(int ind)

findSubDetection

public T findSubDetection(long timeMillis,
 int channelBitmap)

find a sub detection based on it's time and it's channel map

Parameters:

timeMillis - time in milliseconds

channelBitmap - channel map

Returns:

found sub detection, or null if none exists.

findSubDetection

public T findSubDetection(long timeMillis,
 int channelBitmap,
 Class dataClass)

Find a sub detection with a specific time, channel map and data unit class.

Parameters:

timeMillis -

channelBitmap -

dataClass -

Returns:

found sub detection or null.

findSubDetection

public T findSubDetection(long UID)

Find a subdetection with a specific UID

Parameters:

UID - the UID to find

Returns:

the found subdetection, or null

replaceSubDetection

public void replaceSubDetection(T oldOne,
 T newOne)

Replace a sub detection in an event.

if the original sub detection does not exist, then the new one is added anyway.

NOTE: not sure if this is working properly. I think that in the else block, it should simply do a removeSubDetection(oldOne) and addSubDetection(newOne), which properly sets things up to be added/removed from the database. The way it's written now, things are not deleted from the database. Should test this out before using this method

DG - so far as I understand this method, it gets called when we've been scrolling back and forth through the data, so an event may already have sub detections which weren't cleared on data load but the sub dets were removed from the datablock but then reloaded with different id's, so the new objects need to replace the old ones, but other information doesn't need updating.
but I ask why the events were'nt all cleared of all their sub detections when data were loaded?

Parameters:

oldOne - old sub detection

newOne - new sub detection.

removeAllSubDetections

public void removeAllSubDetections()

Remove all sub detection information.

removeSubDetection

public void removeSubDetection(T subDetection)

Remove a sub detection from the data unit.

Parameters:

subDetection - - the sub detection to remove.

getPresentSubDetections

public List<SubdetectionInfo<T>> getPresentSubDetections()

Get a list of sub detections which are actually present.

Returns:

list of sub detections which have a non-null sub data unit.

getSubDetectionInfo

public Vector<SubdetectionInfo<T>> getSubDetectionInfo()

Get the full list of subdetection info's (which may not all have a sub detection in memory)

getSubdetectionInfo

public SubdetectionInfo getSubdetectionInfo(int idx)

Get sub detection info at a specified index.

Parameters:

idx -

getSubdetectionsRemoved

public ArrayList<SubdetectionInfo<T>> getSubdetectionsRemoved()

returns a list of the database indices of all subdetections that have been removed

Returns:

clearSubdetectionsRemoved

public void clearSubdetectionsRemoved()

clears the list of subdetections that have been removed

addSubDetectionInfo

public void addSubDetectionInfo(SubdetectionInfo<T> subDetInfo)

clearSubDetectionData

public void clearSubDetectionData()

Clears all sub detection data. i.e. the holders of sub detection informaiotn, should probably never be called.

clearSubDetectionObjects

public void clearSubDetectionObjects()

Clears actual detections from the sub detection data. This should be called whenever more viewer data are loaded, since we only want references to data units that are in the actual data unit list.