Package cpod

Class FPODReader

java.lang.Object

cpod.FPODReader

public class FPODReader
extends Object

Functions for importing FPOD files.

Note this class should be independent of any PAMGuard functionality.

Although some anming has changed a lot of the variable names are consistent with Pascal code used in FPOD.exe software from whihc this is absed.

Author:

Jamie Macaulay

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	FPODReader.FPODdata	Holds an FPOD detection.
static class	FPODReader.FPODHeader	Holds an FPOD header information
static class	FPODReader.FPODWavData	Holds FPOD wav data.

Field Summary

Fields

Modifier and Type	Field	Description
static final int	FP1_FPOD_DATA_LEN	The length of a standard FPOD entry
static final int	FP3_FPOD_DATA_LEN	The click length for FP3 files.
static final int	FPOD_HEADER	Length of the FPOD header in bytes.
static final float	FPOD_WAV_SAMPLERATE
static final double	WAV_SCALE_FACTOR	Scale factor to convert waveform measurements to PAMGuard -1 to 1 measurements.

Constructor Summary

Constructors

Constructor	Description
FPODReader()

Method Summary

Modifier and Type	Method	Description
static void	BuildSineArray()
static int	importFile(File cpFile, ArrayList<FPODReader.FPODdata> fpodData, int from, int maxNum)	Import an FPOD file.
static ArrayList<CPODClick>	importFPODFile(File cpFile, int from, int maxNum)	Import FPOD data and return a structure of CPOD clicks.
static int	IPItoKhz(int IPI)	Convert IPI to KHz.
static void	main(String[] args)	Test the program
static int[]	makeResampledWaveform(FPODReader.FPODdata click)	Reconstructs sinusoidal waveform from the peaks which have been sampled at 4MHz
static void	populateIPIArray()	Ppulate the IPI array
static int	RawToRealPk(int Pk, int IPI, boolean UseExtendedAmps)	Convert a raw binary peak to true linear peak.
static FPODReader.FPODHeader	readHeader(File cpFile)
static double[]	scaleWavData(int[] wavData)	Scale wave data so it is returned as a double
static short	toUnsigned(byte signedByte)	Java will only have read signed bytes.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

FPOD_HEADER

public static final int FPOD_HEADER

Length of the FPOD header in bytes.

See Also:

• Constant Field Values

FP1_FPOD_DATA_LEN

public static final int FP1_FPOD_DATA_LEN

The length of a standard FPOD entry

See Also:

• Constant Field Values

FP3_FPOD_DATA_LEN

public static final int FP3_FPOD_DATA_LEN

The click length for FP3 files.

See Also:

• Constant Field Values

WAV_SCALE_FACTOR

public static final double WAV_SCALE_FACTOR

Scale factor to convert waveform measurements to PAMGuard -1 to 1 measurements.

See Also:

• Constant Field Values

FPOD_WAV_SAMPLERATE

public static final float FPOD_WAV_SAMPLERATE

See Also:

• Constant Field Values

Constructor Details

FPODReader

public FPODReader()

Method Details

readHeader

public static FPODReader.FPODHeader readHeader(File cpFile)

importFPODFile

public static ArrayList<CPODClick> importFPODFile(File cpFile,
 int from,
 int maxNum)
                                           throws IOException

Import FPOD data and return a structure of CPOD clicks.

Parameters:

cpFile - - the FP1 file.

from - - the click index to save from. e.g. 100 means that only click 100 + in the file is saved

maxNum - - the maximum number of data units to import.

Returns:

an array of CPOD clicks.

Throws:

IOException

importFile

public static int importFile(File cpFile,
 ArrayList<FPODReader.FPODdata> fpodData,
 int from,
 int maxNum)
                      throws IOException

Import an FPOD file.

Parameters:

cpFile - - the FP1 file.

from - - the click index to save from. e.g. 100 means that only click 100 + in the file is saved

maxNum - - the maximum number of data units to import.

Returns:

the total number of clicks in the file.

Throws:

IOException

RawToRealPk

public static int RawToRealPk(int Pk,
 int IPI,
 boolean UseExtendedAmps)

Convert a raw binary peak to true linear peak.

Parameters:

Pk - - the raw maximum peak

IPI - - the inter pulse interval

UseExtendedAmps - - true to use extended amps

Returns:

the real linear peak of he wave

IPItoKhz

public static int IPItoKhz(int IPI)

Convert IPI to KHz.

Parameters:

IPI - - the IPI

Returns:

the kHz value

populateIPIArray

public static void populateIPIArray()

Ppulate the IPI array

toUnsigned

public static short toUnsigned(byte signedByte)

Java will only have read signed bytes. Nick clearly uses a lot of unsigned data, so convert and inflate to int16.

Parameters:

signedByte -

Returns:

unsigned version as int16.

BuildSineArray

public static void BuildSineArray()

scaleWavData

public static double[] scaleWavData(int[] wavData)

Scale wave data so it is returned as a double

Parameters:

wavData - - the wavdata

Returns:

the scaled wav data between -1 and 1;

makeResampledWaveform

public static int[] makeResampledWaveform(FPODReader.FPODdata click)

Reconstructs sinusoidal waveform from the peaks which have been sampled at 4MHz

Parameters:

click - - FPOD click with waveform information.

main

public static void main(String[] args)

Test the program

Parameters:

args -