Package whistleClassifier

Class FragmentClassifierParams

java.lang.Object

whistleClassifier.FragmentClassifierParams

All Implemented Interfaces:

Serializable, Cloneable, ManagedParameters

public class FragmentClassifierParams
extends Object
implements Serializable, Cloneable, ManagedParameters

Parameters class for fragmented whistle classification.

This class contains the basic parameters which could be applied to any fragment classification method including how the whistles were fragmented, and the section length as well as basic information about the input data from the whistle detector.

Sine the classification can use a number of different statistical classifiers, and those classifiers may also be used to solve other classification problems in PAMGUARD the actual classification parameters are stored in a separate abstract class ClassifierParams which are got directly from specific classifiers.

Author:

Doug Gillespie

See Also:

• ClassifierParams
• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
boolean	dumpTextFile
int	minimumContourLength
static final long	serialVersionUID

Constructor Summary

Constructors

Constructor	Description
FragmentClassifierParams()

Method Summary

Modifier and Type	Method	Description
Class	getClassifierClass()
ClassifierParams	getClassifierParams()
int	getClassifierType()
Jama.Matrix	getConfusionMatrix()
int	getFftHop()
int	getFftLength()
String	getFileName()
int	getFragmentLength()
double[]	getFrequencyRange()
double	getMaxFrequency()
double	getMinFrequency()
int	getMinimumContourLength()
double	getMinimumProbability()
int	getNBootstrap()
PamParameterSet	getParameterSet()	Need to override the Matrix fields here so that they return the double[][] array
float	getSampleRate()
int	getSectionLength()
String[]	getSpeciesList()
Jama.Matrix	getStdConfusion()
void	setClassifierParams(ClassifierParams classifierParams)
void	setClassifierType(int classifierType)
void	setConfusionMatrix(Jama.Matrix confusionMatrix)
void	setFftHop(int fftHop)
void	setFftLength(int fftLength)
void	setFragmentLength(int fragmentLength)
void	setFrequencyRange(double[] frequencyRange)
void	setMinimumContourLength(int minimumContourLength)
void	setMinimumProbability(double minimumProbability)
void	setNBootstrap(int bootstrap)
void	setSampleRate(float sampleRate)
void	setSectionLength(int sectionLength)
void	setSpeciesList(String[] speciesList)
void	setStdConfusion(Jama.Matrix stdConfusion)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

serialVersionUID

public static final long serialVersionUID

See Also:

• Constant Field Values

dumpTextFile

public boolean dumpTextFile

minimumContourLength

public int minimumContourLength

Constructor Details

FragmentClassifierParams

public FragmentClassifierParams()

Method Details

getClassifierType

public int getClassifierType()

setClassifierType

public void setClassifierType(int classifierType)

setSpeciesList

public void setSpeciesList(String[] speciesList)

Parameters:

speciesList - the speciesList to set

getSpeciesList

public String[] getSpeciesList()

Returns:

the speciesList

getClassifierClass

public Class getClassifierClass()

getFftLength

public int getFftLength()

setFftLength

public void setFftLength(int fftLength)

getFftHop

public int getFftHop()

setFftHop

public void setFftHop(int fftHop)

getFileName

public String getFileName()

getFragmentLength

public int getFragmentLength()

setFragmentLength

public void setFragmentLength(int fragmentLength)

getSectionLength

public int getSectionLength()

setSectionLength

public void setSectionLength(int sectionLength)

getMinimumProbability

public double getMinimumProbability()

Returns:

the minimumProbability

setMinimumProbability

public void setMinimumProbability(double minimumProbability)

Parameters:

minimumProbability - the minimumProbability to set

getMinimumContourLength

public int getMinimumContourLength()

Returns:

the minimumContourLength

setMinimumContourLength

public void setMinimumContourLength(int minimumContourLength)

Parameters:

minimumContourLength - the minimumContourLength to set

getFrequencyRange

public double[] getFrequencyRange()

setFrequencyRange

public void setFrequencyRange(double[] frequencyRange)

getSampleRate

public float getSampleRate()

setSampleRate

public void setSampleRate(float sampleRate)

getNBootstrap

public int getNBootstrap()

setNBootstrap

public void setNBootstrap(int bootstrap)

getConfusionMatrix

public Jama.Matrix getConfusionMatrix()

setConfusionMatrix

public void setConfusionMatrix(Jama.Matrix confusionMatrix)

getStdConfusion

public Jama.Matrix getStdConfusion()

setStdConfusion

public void setStdConfusion(Jama.Matrix stdConfusion)

getClassifierParams

public ClassifierParams getClassifierParams()

getMinFrequency

public double getMinFrequency()

getMaxFrequency

public double getMaxFrequency()

setClassifierParams

public void setClassifierParams(ClassifierParams classifierParams)

getParameterSet

public PamParameterSet getParameterSet()

Need to override the Matrix fields here so that they return the double[][] array

Specified by:

getParameterSet in interface ManagedParameters

Returns:

description of the parameters in a class.