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ABORT - Static variable in class whistleClassifier.training.ClassifierTrainingProgress
ABORTED - Static variable in class beakedWhaleProtocol.BeakedExperimentData
ABOVE_LEFT - Static variable in class Layout.PamAxis
absAngle(PamVector) - Method in class pamMaths.PamVector
Calculates the smallest angle between two vectors (0 <= angle < pi/2);
absElements() - Method in class pamMaths.PamVector
Make all elements within the vector positive.
absMillisecondsToSamples(long) - Method in class PamguardMVC.PamProcess
Convert a time in milli seconds to a number of samples.
absolute(int) - Method in class generalDatabase.pamCursor.NonScrollablePamCursor
absolute(int) - Method in class generalDatabase.pamCursor.PamCursor
Go t0 an absolute row number
absolute(int) - Method in class generalDatabase.pamCursor.ScrollablePamCursor
absSamplesToMilliseconds(long) - Method in class PamguardMVC.PamProcess
Convert am ADC sample number to a millisecond time.
AbstractCellEditor - Class in likelihoodDetectionModule
The class AbstractCellEditor serves as the base class for the TreeTable's table cell editor.
AbstractCellEditor() - Constructor for class likelihoodDetectionModule.AbstractCellEditor
AbstractControlPanel - Class in targetMotionModule.panels
AbstractControlPanel(TargetMotionControl) - Constructor for class targetMotionModule.panels.AbstractControlPanel
AbstractDetectionMatch - Class in PamDetection
This class aims to match detections picked up on different hydrophones, primarily on WIDE APERTURE arrays.
AbstractDetectionMatch(PamDataUnit) - Constructor for class PamDetection.AbstractDetectionMatch
AbstractDetectionMatch(PamDataUnit, Integer) - Constructor for class PamDetection.AbstractDetectionMatch
AbstractFilter - Class in Filters
Abstract implementation of Filter interface to provide common functionality for two of the main function calls for processing arrays of data.
AbstractFilter() - Constructor for class Filters.AbstractFilter
AbstractLocalisation - Class in PamDetection
Class for localisation information.
AbstractLocalisation(PamDataUnit, int, int) - Constructor for class PamDetection.AbstractLocalisation
AbstractLocalisation(PamDataUnit, int, int, int, PamVector[]) - Constructor for class PamDetection.AbstractLocalisation
AbstractLocaliser<T extends PamDataUnit> - Class in Localiser.bearingLocaliser
Abstract Localiser class.
AbstractLocaliser(PamDataBlock<T>) - Constructor for class Localiser.bearingLocaliser.AbstractLocaliser
AbstractLocaliserControl - Class in staticLocaliser.panels
The basic control panel for changing the pamdetection on the control panel.
AbstractLocaliserControl() - Constructor for class staticLocaliser.panels.AbstractLocaliserControl
AbstractPamScroller - Class in pamScrollSystem
AbstractPamScroller(String, int, int, long, boolean) - Constructor for class pamScrollSystem.AbstractPamScroller
AbstractPamScrollerAWT - Class in pamScrollSystem
AbstractPamScrollerAWT(String, int, int, long, boolean) - Constructor for class pamScrollSystem.AbstractPamScrollerAWT
AbstractScrollManager - Class in pamScrollSystem
AbstractSLAlgorithm - Class in staticLocaliser.algorithms
This is the abstract class for building an algorithm for the static localiser.
AbstractSLAlgorithm(StaticLocalise) - Constructor for class staticLocaliser.algorithms.AbstractSLAlgorithm
AbstractTargetMotionInformation - Class in targetMotionModule
AbstractTargetMotionInformation(ArrayList<PamDetection>, PamDataBlock) - Constructor for class targetMotionModule.AbstractTargetMotionInformation
AbstractTargetMotionModel - Class in targetMotionModule.algorithms
AbstractTargetMotionModel() - Constructor for class targetMotionModule.algorithms.AbstractTargetMotionModel
AbstractTargetMotionModel<T extends PamDetection> - Class in targetMotionOld
Reinstated Target motion add-in as used by the click detector.
AbstractTargetMotionModel() - Constructor for class targetMotionOld.AbstractTargetMotionModel
AbstractTDZoomable - Class in dataPlots.mouse
AbstractTDZoomable() - Constructor for class dataPlots.mouse.AbstractTDZoomable
AbstractTimeDelayLocaliser<T extends PamDetection> - Class in targetMotionOld
Reinstated Target motion add-in as used by the click detector.
AbstractTimeDelayLocaliser() - Constructor for class targetMotionOld.AbstractTimeDelayLocaliser
AbstractVRMethod - Class in videoRangePanel.vrmethods
AbstractVRMethod provides a significant amount of the basic functionality required to determine the range of an animal from an image.
AbstractVRMethod(VRControl) - Constructor for class videoRangePanel.vrmethods.AbstractVRMethod
AbstractWekaClassifier - Class in classifier
AbstractWekaClassifier() - Constructor for class classifier.AbstractWekaClassifier
AbstractWhistleDataBlock<T extends AbstractWhistleDataUnit> - Class in whistlesAndMoans
AbstractWhistleDataBlock(Class, String, PamProcess, int) - Constructor for class whistlesAndMoans.AbstractWhistleDataBlock
AbstractWhistleDataUnit - Class in whistlesAndMoans
AbstractWhistleDataUnit(long, int, long, long) - Constructor for class whistlesAndMoans.AbstractWhistleDataUnit
accept(File) - Method in class clickDetector.dialogs.ClickAlarmDialog.SoundFilter
accept(File) - Method in class Map.MapFileFilter
accept(File) - Method in class PamUtils.PamFileFilter
accept(File) - Method in class videoRangePanel.ImageFileFilter
accepted - Variable in class likelihoodDetectionModule.LikelihoodDetectionParametersDialog
The accepted state of the dialog (i.e., whether OK has been selected).
AcceptMeasurementDialog - Class in videoRangePanel.panels
ackOk(int) - Method in class smlPingerControl.SMLPingerProcess
Check the ack state.
ackOutOfDate - Variable in class whistleDetector.WhistleParameters
Acknowledge that this unit is out of date.
acosh(double) - Static method in class Filters.ChebyWindow
Calculate acosh function.
AcousticDataBlock<Tunit extends AcousticDataUnit> - Class in PamguardMVC
Class for all PAMGAURD data based on acoustic types of data, i.e.
AcousticDataBlock(Class, String, PamProcess, int) - Constructor for class PamguardMVC.AcousticDataBlock
AcousticDataUnit - Class in PamDetection
Basic class for all acoustic data, everything from raw audio data to final detections with localisations
AcousticDataUnit(long, int, long, long) - Constructor for class PamDetection.AcousticDataUnit
AcousticSQLLogging - Class in PamDetection
AcquireNmeaData - Class in NMEA
Acquisition - package Acquisition
Acquisition.offlineFuncs - package Acquisition.offlineFuncs
Acquisition.pamAudio - package Acquisition.pamAudio
Acquisition.rona - package Acquisition.rona
AcquisitionControl - Class in Acquisition
Main data acquisition control to get audio data from sound cards, NI cards (via UDP), files, directories of files, etc.
AcquisitionControl(String) - Constructor for class Acquisition.AcquisitionControl
Main control unit for audio data acquisition.
AcquisitionControl(String, boolean) - Constructor for class Acquisition.AcquisitionControl
AcquisitionCParameters - Class in Acquisition
Very simplified version of the Acquisition parameters to be passed over the JNI to the C backend.
AcquisitionCParameters() - Constructor for class Acquisition.AcquisitionCParameters
AcquisitionDialog - Class in Acquisition
Main dialog for acquisition control.
AcquisitionLogging - Class in Acquisition
Very simple concrete implementation of SQLLogging to log the starts and stops of PAMGUARD in the database.
AcquisitionLogging(PamDataBlock, AcquisitionControl) - Constructor for class Acquisition.AcquisitionLogging
acquisitionModule - Variable in class smlGainControl.SMLGainParameters
DAQ module this gain control is applying itself to
acquisitionParameters - Variable in class Acquisition.AcquisitionControl
AcquisitionParameters - Class in Acquisition
AcquisitionParameters() - Constructor for class Acquisition.AcquisitionParameters
AcquisitionProcess - Class in Acquisition
Data acquisition process for all types of input device.
AcquisitionSettings - Class in likelihoodDetectionModule
The AcquisitionSettings class provides a module-local storage object for holding on to the properties of the audio data source (acquisition module) upon which the module is depending.
AcquisitionSettings() - Constructor for class likelihoodDetectionModule.AcquisitionSettings
Instantiates a new acquisition settings.
acquisitionStopped() - Method in class Acquisition.AcquisitionProcess
actionPerformed(ActionEvent) - Method in class Acquisition.FileInputSystem
actionPerformed(ActionEvent) - Method in class AIS.AISDisplayDialog
actionPerformed(ActionEvent) - Method in class Array.ArrayDialog
actionPerformed(ActionEvent) - Method in class Array.ChannelPanel
actionPerformed(ActionEvent) - Method in class Array.HydrophoneDialogPanel
actionPerformed(ActionEvent) - Method in class clickDetector.ClickBTDisplay.FollowBoxListener
actionPerformed(ActionEvent) - Method in class clickDetector.ClickClassifiers.basic.ClickTypeDialog
actionPerformed(ActionEvent) - Method in class clickDetector.ClickClassifiers.ClickTypesDialog
actionPerformed(ActionEvent) - Method in class clickDetector.ClickSidePanel.SidePanel
Cycle through all available alarms, playing each one
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.ArrangeWindows
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.MapOptions
actionPerformed(ActionEvent) - Method in class clickDetector.ClickTabPanelControl.OverlayOptions
actionPerformed(ActionEvent) - Method in class clickDetector.ClickToolBar
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickAlarmDialog
ActionListener events for the GUI components
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickDisplayDialog
actionPerformed(ActionEvent) - Method in class clickDetector.dialogs.ClickStorageOptionsDialog
actionPerformed(ActionEvent) - Method in class clickDetector.IDI_DisplayDialog
Starts the open file dialog
actionPerformed(ActionEvent) - Method in class dataPlots.HidingControlPanel.RemoveAGraph
actionPerformed(ActionEvent) - Method in class difar.display.DifarClipDecorations.EditSpeciesList
actionPerformed(ActionEvent) - Method in class difar.display.DifarClipDecorationsOld1575.EditSpeciesList
actionPerformed(ActionEvent) - Method in class fftManager.FFTPluginParamsDialog
actionPerformed(ActionEvent) - Method in class Filters.FilterDialogPanel
actionPerformed(ActionEvent) - Method in class generalDatabase.dataExport.ValueFilterDialog
actionPerformed(ActionEvent) - Method in class GPS.ShipDimensionsFields
actionPerformed(ActionEvent) - Method in class GPS.UpdateClockDialog
actionPerformed(ActionEvent) - Method in class ishmaelComms.ProcessIshmaelData
actionPerformed(ActionEvent) - Method in class IshmaelDetector.MatchFiltParamsDialog
actionPerformed(ActionEvent) - Method in class IshmaelLocator.IshLocParamsDialog
actionPerformed(ActionEvent) - Method in class likelihoodDetectionModule.NewBandNameDialog
actionPerformed(ActionEvent) - Method in class likelihoodDetectionModule.TargetConfigurationNameDialog
actionPerformed(ActionEvent) - Method in class NMEA.AcquireNmeaData
actionPerformed(ActionEvent) - Method in class NMEA.NMEAParametersDialog
actionPerformed(ActionEvent) - Method in class PamController.ModuleOrderDialog
actionPerformed(ActionEvent) - Method in class PamUtils.LatLongDialog
actionPerformed(ActionEvent) - Method in class PamUtils.LatLongDialogStrip
actionPerformed(ActionEvent) - Method in class PamView.ObserverListPopup
actionPerformed(ActionEvent) - Method in class PamView.PamSymbolDialog
actionPerformed(ActionEvent) - Method in class PamView.PamWaitAnimation
actionPerformed(ActionEvent) - Method in class PamView.SourcePanel
action listener to update channel list when a a different source is selected
actionPerformed(ActionEvent) - Method in class rocca.RoccaClickTypeDialog
actionPerformed(ActionEvent) - Method in class rocca.RoccaParametersDialog
actionPerformed(ActionEvent) - Method in class Spectrogram.SpectrogramParamsDialog
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.Export
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.ExportAll
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.RunAll
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.LocalisationVisualisation.RunSelTD
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.BatchRun
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.LocaliserOptions
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Options
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Run
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.RunAll
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.RunRealTime
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.SelectDataBlock
actionPerformed(ActionEvent) - Method in class staticLocaliser.panels.StaticLocalisationMainPanel.Stop
actionPerformed(ActionEvent) - Method in class targetMotionModule.panels.EventControlPanel.PopMenuLocalise
actionPerformed(ActionEvent) - Method in class WILDInterface.WILDParametersDialog
Starts the open file dialog
actionRecorderTrigger(RecorderTrigger, PamDataUnit, long) - Static method in class SoundRecorder.RecorderControl
static version of actionRecordTrigger can be called from anywhere in PamGuard.
ActionSendEmail - Class in alarm.actions
ActionSendEmail(AlarmControl) - Constructor for class alarm.actions.ActionSendEmail
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.ActionSendEmail
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.AlarmAction
Act on the alarm - called every time the data unit is updated.
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.serial.AlarmSerialAction
actOnAlarm(AlarmDataUnit) - Method in class alarm.actions.sound.PlaySound
add(StreamerDataUnit) - Method in class Array.streamerOrigin.GPSOriginIterator
add(StreamerDataUnit) - Method in class Array.streamerOrigin.StreamerDataIterator
add(LandmarkData) - Method in class landMarks.LandmarkDatas
add(String) - Method in class loggerForms.UDFError
add(ItemInformation, String) - Method in class loggerForms.UDFError
add(String) - Method in class loggerForms.UDFErrors
add(ItemInformation, String) - Method in class loggerForms.UDFErrors
add(E) - Method in class PamguardMVC.ChannelIterator
add(Tunit) - Method in class PamguardMVC.ReverseChannelIterator
add(PamVector) - Method in class pamMaths.PamVector
Add another vector to this vector and return the result in a new Vector
add(PamVector...) - Static method in class pamMaths.PamVector
Add any number of vectors together.
add(JComponent) - Method in class PamView.HidingSidePanel
Add a component to the side panel
add(PamKeyItem) - Method in class PamView.KeyPanel
add(String, Component) - Method in class PamView.PamTabbedPane
ADD_CONTROLLEDUNIT - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamControlledUnit is added
ADD_DATABLOCK - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamDataBlock is added
ADD_PROCESS - Static variable in interface PamController.PamControllerInterface
Automatically sent when a PamProcess is added
addActionListener(ActionListener) - Method in class PamView.ColourComboBox
addAddOn(SQLLoggingAddon) - Method in class generalDatabase.SQLLogging
Add an SQL Logging addon - something which adds some standard colums to what it probably a non standard table, e.g.
addAffectedDataBlock(PamDataBlock) - Method in class offlineProcessing.OfflineTask
Add an affected data block.
addAISData(AISDataUnit) - Method in class AIS.AISDataBlock
aisDataUnit is always a new unit extracted from a group of AIS strings, but with a single lot of data.
addAngleData(double) - Method in class angleVetoes.AngleVetoes
Add data to angle stats histogram for display
addAnnotationType(DataAnnotationType) - Method in class annotationMark.MarkModule
This must be called from the concrete super class constructor with a valid SoloannotationType to set up the module.
addArray(PamArray) - Method in class Array.ArrayDialog
addArray(PamArray) - Method in class Array.ArrayManager
addASighting(boolean) - Method in class rocca.RoccaSidePanel.SidePanel
Ask the user for a new sighting number, and add it to the side panel
addASighting(String) - Method in class rocca.RoccaSidePanel.SidePanel
Add the new sighting number to the sidepanel
addAxisVisulaisation(String, String, String) - Method in class PamGraph3D.PamPanel3D
Add a small icon to show the oreintation of the graph
addBTMenuItems(Container, ClickBTDisplay, boolean, ClickDetection) - Method in class clickDetector.offlineFuncs.ClicksOffline
Add menu items associated with right mouse actions on bearing time display
addButton() - Method in class clickDetector.ClickClassifiers.basic.BasicIdentifierPanel
addButton() - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierPanel
addButton() - Method in class clickDetector.ClickClassifiers.UserTypesPanel
addCalibrationData(VRCalibrationData) - Method in class videoRangePanel.VRParameters
AddCalibrationMethod - Class in videoRangePanel.vrmethods
AddCalibrationMethod(VRControl) - Constructor for class videoRangePanel.vrmethods.AddCalibrationMethod
addCellEditorListener(CellEditorListener) - Method in class likelihoodDetectionModule.AbstractCellEditor
addChangeListener(HidingDialogChangeListener) - Method in class PamView.hidingpanel.HidingDialogComponent
addChangeObserver(PlaybackChangeObserver) - Method in class soundPlayback.PlaybackSystem
addChildSpectroRotateGroup(BranchGroup) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
addChildtoGraphicsGroup(BranchGroup) - Method in class PamGraph3D.PamPanel3D
addChildtoGraphicsGroup(TransformGroup) - Method in class PamGraph3D.PamPanel3D
addChildtoRotateGroup(BranchGroup) - Method in class PamGraph3D.PamPanel3D
Add a branchgroup to the rotateGroup
addChildtoRotateGroup(TransformGroup) - Method in class PamGraph3D.PamPanel3D
Add a transform group to the rotateGroup
addChiValuestoGraph(ArrayList<Double>) - Method in class Localiser.timeDelayLocalisers.MCMCPanel
Add an arraylist of chi values to the graph.
addChunkData(WavChunkData) - Method in class Acquisition.WavHeader
addClicks(List<ClickDetection>) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a list of clicks to an event.
addClipGenSettings(ClipGenSetting) - Method in class clipgenerator.ClipSettings
Add a new clip gen setting to the list.
addColumn(Connection, SQLTypes, String, EmptyTableDefinition, PamTableItem) - Static method in class generalDatabase.TableUtilities
addComponent(JPanel, Component, GridBagConstraints) - Static method in class Map.GpsTextDisplay
addComponent(JPanel, Component, GridBagConstraints) - Static method in class Map.MouseMeasureDisplay
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.GroupedSourcePanel
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamBorderPanel
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamDialog
add to a panel which must use GridBagLayout
addComponent(JPanel, Component, GridBagConstraints) - Static method in class PamView.PamPanel
addContour(WhistleContour) - Method in class whistleClassifier.training.TrainingDataSet
addContour(double[], double[]) - Method in class whistleClassifier.training.TrainingDataSet
addContour(double[], double[]) - Method in class whistleClassifier.TrainingDataSet
addControl(JComponent) - Method in class pamScrollSystem.PamScroller
Add an additional control to the control panel which will sit to the right of or just below the wee buttons used for scroll bar navigation.
addControlledUnit(PamControlledUnit) - Method in class PamController.PamController
addControlledUnit(PamControlledUnit) - Method in interface PamController.PamControllerInterface
Adds a PamControlledUnit to the controller.
addControlledUnit(PamControlledUnit) - Method in class PamView.GuiFrameManager
addControlledUnit(PamControlledUnit) - Method in class PamView.PamGui
addControlledUnit(PamControlledUnit) - Method in class PamView.PamObjectViewer
addControlledUnit(PamControlledUnit) - Method in interface PamView.PamViewInterface
addCount(double, double, int) - Method in class alarm.AlarmCounter
Add a count to the total.
addCount(double, double, int) - Method in class alarm.AlarmDecibelCounter
addCount(double, double, int) - Method in class clickDetector.alarm.ClickAlarmCounter
addCrossCorError(ArrayList<ArrayList<Double>>, double, float) - Static method in class Localiser.timeDelayLocalisers.MCMC
Adds the cross correlation error to the time delay errors array.
addCtrlKeyListener(char, ActionListener) - Method in class PamView.CtrlKeyManager
addData(double) - Method in class difar.calibration.CalibrationHistogram
Add new data to the histogram
addData(DifarDataUnit) - Method in class difar.trackedGroups.TrackedGroupDataUnit
Add a new bearing to this group.
addData(int, double) - Method in class noiseBandMonitor.BandPerformance
addData(double, boolean) - Method in class pamMaths.PamHistogram
Add a single unit value to the histogram and optionally notify all observers
addData(double) - Method in class pamMaths.PamHistogram
Add a single point of data to the histogram but don't notify observers
addData(double, double) - Method in class pamMaths.PamHistogram
Add weighted data to the histogram
addData(long, double[][]) - Method in class SoundRecorder.PamAudioFileStorage
addData(long, double[][]) - Method in interface SoundRecorder.RecorderStorage
Adds data to the store.
addDataAnnotation(DataAnnotation) - Method in class PamguardMVC.PamDataUnit
Adds a data annotation to the data unit.
addDataAnnotationType(DataAnnotationType) - Method in class PamguardMVC.PamDataBlock
Add a data annotation type to a datablock.
addDataBlock(PamDataBlock) - Method in class pamScrollSystem.AbstractPamScroller
Add a datablock to the list for this scroller.
addDataFilter(DataFilter) - Method in class generalDatabase.dataExport.DataExportDialog
addDatagramData(PamDataUnit, double[]) - Method in class clickDetector.ClickDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class cpod.CPODDataGramProvider
addDatagramData(PamDataUnit, double[]) - Method in interface dataGram.DatagramProvider
Add datagram data to the dataGram line.
addDatagramData(PamDataUnit, double[]) - Method in class dbht.offline.DbHtDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class ltsa.LtsaDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class noiseBandMonitor.NoiseBandDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class noiseOneBand.offline.OneBandDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class RightWhaleEdgeDetector.RWEDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class whistlesAndMoans.WMDatagramProvider
addDatagramData(PamDataUnit, double[]) - Method in class xBatLogViewer.XBatDatagram
addDataItem(TDDataProvider) - Method in class dataPlots.layout.TDGraph
addDataItem(TDDataInfo) - Method in class dataPlots.layout.TDGraph
Add a data item to be plotted on this display
addDataListInfo(DataListInfo) - Method in class dataPlots.layout.GraphParameters
addDataPoint(DatagramDataPoint) - Method in class dataGram.Datagram
Add a data point to a datagram
addDataPoint(TmapPoint) - Method in class dataMap.OfflineDataMap
Add a new map point into the list.
addDataSet(TrainingDataSet) - Method in class whistleClassifier.training.TrainingDataGroup
addDataSet(TrainingDataSet) - Method in class whistleClassifier.TrainingDataGroup
addDataToDataBlock(AngleDataUnit) - Method in class IMU.IMUControl
addDataToDataBlock(AngleDataUnit) - Method in class IMU.IMUImportMananger
addDataUnit(PamDetection) - Method in class PamDetection.TDArrayList
addDataUnits(DataLineInfo) - Method in class dataPlots.data.TDDataInfo
Add a type of data unit to the list.
addDeletedUnit(PamDataUnit) - Method in class PamguardMVC.SaveRequirements
Add a deleted unit
addDeleteIndexes(int) - Method in class PamguardMVC.SaveRequirements
addDependency(PamDependency) - Method in interface PamModel.PamDependent
addDependency(PamDependency) - Method in class PamModel.PamModuleInfo
addDetectorMenuItems(Frame, Container) - Method in class clickDetector.offlineFuncs.ClicksOffline
Add offline functions to the top of the main Detector menu when operating in viewer mode.
addDetectorMenuItems(ClickControl, JMenu, int) - Method in class rocca.RoccaControl
Adds a menu item when in viewer mode to the Click Detector menu, to pass events to Rocca for measurement.
addDetectorMenuItems(Frame, JMenu) - Method in class targetMotionModule.TargetMotionLocaliser
addDetectorMenuItems(Frame, JMenu) - Method in class targetMotionOld.TargetMotionLocaliser
addDisplayMenuItems(JPopupMenu) - Method in class clipgenerator.clipDisplay.ClipDisplayDecorations
Add additional functionality to the popup menu on a display unit.
addDisplayMenuItems(JPopupMenu) - Method in class difar.display.DifarClipDecorations
addDisplayMenuItems(JPopupMenu) - Method in class difar.display.DifarClipDecorationsOld1575
addDisplayPanelProvider(DisplayPanelProvider) - Static method in class Layout.DisplayProviderList
addDistanceMeters(double, double) - Method in class PamUtils.LatLong
Add distances in metres East and metres North to a LatLong
Note that this assumes a flat earth model away from poles, so it's possible to create stupid values.
addDriverToList(String, int[], int[]) - Method in class asiojni.AsioDriverInfos
addDriverToList(String, int[], int[]) - Method in class asiojni.AsioJniInterface
addElement() - Method in class Array.HydrophoneDialogPanel
addF1KeyListener(JComponent) - Method in class loggerForms.controls.LoggerControl
addFilenameTag(String, String, String) - Static method in class staticLocaliser.SLCSVLogging
Add a tag to a filename.
addFileType(String) - Method in class Map.MapFileFilter
addFileType(String) - Method in class PamUtils.PamFileFilter
addFitData(GpsData, LatLong, double, double, double, double, double, double) - Method in class Localiser.bearingLocaliser.GroupDetection
addFocusListenerToAllSubComponants(FocusListener, Component) - Static method in class loggerForms.controls.LoggerControl
addFolderChangeListener(FolderChangeListener) - Method in class PamUtils.SelectFolder
Add a folder change listener to receive notification if the browse button was used to select a new folder.
addFormDescription(String) - Method in class loggerForms.FormsControl
addFragemnt(WhistleFragment) - Method in class whistleClassifier.BasicFragmentStore
addFragemnt(WhistleFragment) - Method in interface whistleClassifier.FragmentStore
Add a whistle fragment to the store
addFragemnt(WhistleFragment) - Method in class whistleClassifier.HistoFragmentStore
addGraph(ActionEvent) - Method in class dataPlots.HidingControlPanel
addGraph(Component) - Method in class dataPlots.layout.TDGraphContainer
addGraph() - Method in class dataPlots.TDControl
addGraphParameters(GraphParameters) - Method in class dataPlots.TDParameters
addHistogram(PamHistogram) - Method in class pamMaths.HistogramDisplay
addHoverData(Coordinate3d, PamDataUnit) - Method in class PamView.GeneralProjector
addHoverData(Coordinate3d, PamDataUnit, int) - Method in class PamView.GeneralProjector
addHydrophone(Hydrophone) - Method in class Array.PamArray
addIcon(Icon, String) - Method in class PamView.BasicKeyItem
addIcon(Component, String) - Method in class PamView.BasicKeyItem
addIconToGrid(Icon) - Method in class PamView.IconPanel
addItem(LookupItem) - Method in class generalDatabase.lookupTables.LookupList
Add an item to the list
addItemError() - Method in class loggerForms.ItemDescription
Add one to the item error count.
addKeyListener(FormDescription, String) - Method in class loggerForms.FormsHotKeyControl
Add a new listener for a hotkey.
addLatLong(LatLong) - Method in class Map.MapContour
addLayoutComponent(String, Component) - Method in class dataMap.DataMapLayout
addLayoutComponent(String, Component) - Method in class PamView.CornerLayout
addLayoutComponent(Component, Object) - Method in class PamView.CornerLayout
addLayoutComponent(String, Component) - Method in class PamView.VerticalLayout
Not used by this class
addLight(DirectionalLight) - Method in class PamGraph3D.PamPanel3D
Add lighting to the root group.
addListSelectionListener(ListSelectionListener) - Method in class clickDetector.ClickSpectrumTemplateEditDialog
addListSelectionListener(ListSelectionListener) - Method in class clickDetector.offlineFuncs.OfflineEventListPanel
addLocalisationContents(int) - Method in class PamguardMVC.PamDataBlock
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface Localiser.DisplayLocaliserMenu
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface Localiser.timeDelayLocalisers.DisplayLocaliserMenu
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in class targetMotionModule.panels.EventControlPanel
If we want to add a menu item to pop menu in another module then we need to check we can localise the detection, if so then add an option to the menu to localise the selected detection.
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in interface targetMotionModule.panels.TargetMotionControlPanel
addLocaliserMenuItem(JPopupMenu, PamDetection) - Method in class targetMotionModule.TargetMotionControl
addLocContents(int) - Method in class PamDetection.AbstractLocalisation
addMainComponent(Component) - Method in class PamView.hidingpanel.HidingPanel
Add the mainComponent to the hiding panel
addManagesSymbol(ManagedSymbol) - Method in class PamView.PamSymbolManager
Add a managed symbol - wherever you want to use the symbol manager must implement the ManagedSymbol interface
addMeasurementListener(AngleMeasurementListener) - Method in class angleMeasurement.AngleMeasurement
addMenuItem(AbstractButton) - Method in class PamView.MenuItemEnabler
Add a menu item to a menu item enabler.
addMenuItems(JMenuItem, TDInfoMonitor) - Method in class dataPlots.data.TDDataProviderRegister
Add menu items to an existing menu.
addMenuItems(JPopupMenu) - Method in interface PamGraph3D.graphDisplay3D.GraphDisplay3DAxisProvider
Add menu items to the JPopUpMenu() in the diplay.
addMessage(String) - Method in interface whistleClassifier.training.MessageArea
addModule(Frame, PamModuleInfo) - Method in class PamController.PamController
addModule(Frame, PamModuleInfo) - Method in interface PamController.PamControllerInterface
Add a new PamControlledUnit
addModulePart(DStrModulePartInfo) - Method in class decimus.summarystring.DStrModuleInfo
addMouseAdapter(MouseAdapter) - Method in class Map.MapController
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.MapController
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.MapTabPanelControl
addMouseAdapterToMapPanel(MouseAdapter) - Method in class Map.SimpleMap
addMouseGetVirtualLocation(MouseGetVirtualLocation) - Method in class PamGraph3D.PamPanel3D
addMouseGetVirtualLocation(MouseGetVirtualLocation) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
addMouseListener(MouseListener) - Method in class clickDetector.offlineFuncs.OfflineEventListPanel
addMouseListenerToAllSubComponants(MouseListener, Component) - Static method in class loggerForms.controls.LoggerControl
addMouseRightClickMenu(MouseBehavior) - Method in class PamGraph3D.PamPanel3D
addMouseRightClickMenu(MouseBehavior) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
addMouseRotate() - Method in class PamGraph3D.PamPanel3D
Add mouse rotate functionality.
addMouseRotate() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Add mouse rotate functionality
addMouseTranslate() - Method in class PamGraph3D.PamPanel3D
Add mouse translate functionality.
addMouseWheelSource(Component) - Method in class pamScrollSystem.AbstractPamScrollerAWT
Add a component to the scrollers mouse wheel listener.
addMouseZoom() - Method in class PamGraph3D.PamPanel3D
Add mouse zoom functionality.
addNewControl() - Method in class loggerForms.formdesign.FormEditDialog
Add a new control to the end of the controls list.
addNewEndTime(long) - Method in class generalDatabase.DBOfflineDataMapPoint
Add a new end time to the data map
addNoiseMeasurementBand(NoiseMeasurementBand) - Method in class noiseMonitor.NoiseSettings
Add a noise measurement band to the end of the list.
addNoiseMeasurementBand(int, NoiseMeasurementBand) - Method in class noiseMonitor.NoiseSettings
Add a noise measurement band at a specific place in the list.
addObserver(PamObserver) - Method in class PamguardMVC.PamDataBlock
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamDataBlock
addObserver(PamObserver) - Method in class PamguardMVC.PamObservable
Adds a PamObserver, which will then receive notifications when data is added.
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamObservable
addObserver(PamObserver) - Method in class PamguardMVC.PamRawDataBlock
addObserver(PamObserver, boolean) - Method in class PamguardMVC.PamRawDataBlock
addObserver(PamScrollObserver) - Method in class pamScrollSystem.AbstractPamScroller
Ad an observer that will receive notifications when the the scroller moves.
addOfflineDataMap(OfflineDataMap) - Method in class PamguardMVC.PamDataBlock
Adds a new offline datamap to the data block
addOfflineMenuItems(Container, Frame) - Method in class whistleClassifier.offline.ClassifierOffline
addOfflineSlice(SliceData) - Method in class whistlesAndMoans.ConnectedRegion
Add in a slice during offline mode.
addOfflineTaskGroup(OfflineTaskGroup) - Method in class PamController.PamControlledUnit
Registers the offlineTaskGroup with the PamControlledUnit on instantiation.
addOtherRelatedMenuItems(Frame, JMenu, String) - Method in class clickDetector.ClickControl
addOtherRelatedMenuItems(Frame, JMenu, String) - Method in class PamController.PamControlledUnit
addOutputDataBlock(PamDataBlock) - Method in class Array.HydrophoneProcess
addOutputDataBlock(PamDataBlock) - Method in class PamguardMVC.PamProcess
Adds an additional PamDataBlock to the process
addPamData(ClickTrainDetection) - Method in class clickDetector.ClickTrainDataBlock
addPamData(OfflineEventDataUnit) - Method in class clickDetector.offlineFuncs.OfflineEventDataBlock
addPamData(GpsDataUnit) - Method in class GPS.GPSDataBlock
addPamData(AngleDataUnit) - Method in class IMU.IMUDataBlock
addPamData(FormsDataUnit) - Method in class loggerForms.FormsDataBlock
addPamData(NMEADataUnit) - Method in class NMEA.NMEADataBlock
addPamData(Tunit) - Method in class PamguardMVC.PamDataBlock
Adds a new PamDataUnit to the PamDataBlock.
addPamData(RawDataUnit) - Method in class PamguardMVC.PamRawDataBlock
addPamData(Tunit) - Method in class PamguardMVC.SingletonDataBlock
addPamData(SLResult) - Method in class staticLocaliser.StaticLocaliserDataBlock
addPamProcess(PamProcess) - Method in class PamController.PamControlledUnit
Adds a PamProcess to the ControlledUnit
addPamScroller(AbstractPamScroller) - Method in class pamScrollSystem.AbstractScrollManager
Add a new scroller to the managed list.
addPamScroller(AbstractPamScroller) - Method in class pamScrollSystem.ViewerScrollerManager
addPartData(String, String, double[]) - Method in class decimus.summarystring.DStrDataUnit
addPassData(boolean) - Method in class angleVetoes.AngleVetoes
Add data to pas / fail stats for display
addPeak(int, RWEDetectionPeak, int) - Method in class RightWhaleEdgeDetector.RWESound
Add a new peak to extend the slice.
addPeak(WhistlePeak) - Method in class whistleDetector.WhistleShape
Add a new peak to the contour
addPixel(int, int, FFTDataUnit) - Method in class whistlesAndMoans.ConnectedRegion
addPlotListener(PlotMouseAdapter) - Method in class dataPlots.layout.TDGraph
Add a mouse plot adapter to each panel on the graph.
addPlotMouseListener(PlotMouseListener) - Method in class dataPlots.layout.TDGraph
Add a plot mouse listener.
addPlotMouseMotionListener(PlotMouseMotionListener) - Method in class dataPlots.layout.TDGraph
Add a plot mouse motion listener.
addPlotZoomer(PlotZoomerAdapter) - Method in class dataPlots.layout.TDGraph
Add a plot zoomer adapter to the graph.
addPositionReport(AISPositionReport) - Method in class AIS.AISDataUnit
addQuadrature(PamVector...) - Static method in class pamMaths.PamVector
Add any number of vectors together in quadrature.
addQueueList(StationQueue) - Method in class loc3d_Thode.CrossStationMatcher
addRangeSpinnerListener(RangeSpinnerListener) - Method in class pamScrollSystem.RangeSpinner
Add a range spinner listener.
addRawData(RawDataUnit, int) - Method in class Acquisition.rona.RonaGatherer
addRelatedMenuItems(Frame, JMenu, String) - Method in class PamController.PamControlledUnit
addRequiredDataBlock(PamDataBlock) - Method in class offlineProcessing.OfflineTask
Add a required data block.
addResults(TargetMotionResult[]) - Method in class targetMotionModule.TargetMotionLocaliser
addResults(TargetMotionResult[]) - Method in class targetMotionOld.TargetMotionLocaliser
addScroller(AbstractPamScroller) - Method in class pamScrollSystem.ScrollerCoupling
Add a new scroller to the coupling
addSelectedDataUnit(FoundDataUnit) - Method in class dataPlots.layout.TDGraph
Add a selected data unit to the current selected data unit list.
addSelectedDataUnit(ArrayList<FoundDataUnit>) - Method in class dataPlots.layout.TDGraph
Add a list of data units to the end current selected data units.
addSelectionListener(ActionListener) - Method in class PamView.SourcePanel
Add a listener to the data source drop down list
addSensorData(float[], int) - Method in class d3.D3DataUnit
addSet(SweepClassifierSet) - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierParameters
addSet(int, SweepClassifierSet) - Method in class clickDetector.ClickClassifiers.basicSweep.SweepClassifierParameters
addSettings(PamControlledUnitSettings) - Method in class PamController.PamSettingsGroup
Add settings to the list of different unit settings
addSettings(Serializable) - Method in class spectrogramNoiseReduction.SpectrogramNoiseSettings
addSettingsGroup(PamSettingsGroup) - Method in class generalDatabase.DBSettingsStore
addSimObject(SimObject) - Method in class simulatedAcquisition.SimParameters
addSourcePanelMonitor(SourcePanelMonitor) - Method in class PamView.SourcePanel
addSpecialTimeRange(double) - Method in class pamScrollSystem.RangeSpinner
Add a single special time range, e.g.
addSpecialTimeRange(double[]) - Method in class pamScrollSystem.RangeSpinner
Add some special time ranges, e.g.
addSpeciesParams(DifarParameters.SpeciesParams, boolean) - Method in class difar.DifarParameters
Create a new set of audio clip parameters for a given species
addSpeciesTreeVotes(String, double[]) - Method in class rocca.RoccaSidePanel
Finds the RoccaSightingDataUnit with the passed sighting number, and adds the tree votes to the running total.
addSpeciesTreeVotes(double[]) - Method in class rocca.RoccaSightingDataUnit
Adds the passed array of tree votes to the current array.
addSpectrogram(boolean) - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Add a spectrogram to the graph.
addSpectrogram2D() - Method in class clickDetector.ConcatenatedSpectrogram
Adds a spectrogram to the graph
addSpectrogram2D() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
Adds a spectrogram to the graph
addSpectrogram3D() - Method in class clickDetector.ConcatenatedSpectrogram
addSpectrogram3D() - Method in class PamGraph3D.spectrogram3D.Spectrogram3DPamGraph
addSpectrogramMarkObserver(SpectrogramMarkObserver) - Static method in class Spectrogram.SpectrogramMarkObservers
addStreamer(Streamer) - Method in class Array.PamArray
Add a streamer and return the streamer id which will be one less than the number of streamers.
addSubDetection(ClickDetection, boolean) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a sub detection with the option of not increasing the click count.
addSubDetection(ClickDetection) - Method in class clickDetector.offlineFuncs.OfflineEventDataUnit
Add a new click to the event.
addSubDetection(t) - Method in class Localiser.bearingLocaliser.GroupDetection
addSubDetection(T) - Method in class PamDetection.PamDetection
Add a sub detection to the sub detection list.
addSuperDetection(PamDetection) - Method in class clickDetector.ClickDetection
addSuperDetection(U) - Method in class PamDetection.PamDetection
addTab(String, Icon, Component, boolean) - Method in class PamView.hidingpanel.TabbedHidingPane
addTab(String, Icon, Component, boolean, int) - Method in class PamView.hidingpanel.TabbedHidingPane
addTabChangeListener(ChangeListener) - Method in class PamView.hidingpanel.TabbedHidingPane
addTableItem(PamTableItem) - Method in class generalDatabase.EmptyTableDefinition
Adds a new table item
addTableItems(PamTableDefinition) - Method in class annotation.calcs.snr.SnrSqlAddon
addTableItems(PamTableDefinition) - Method in class annotation.string.StringSQLLogging
addTableItems(PamTableDefinition) - Method in interface generalDatabase.SQLLoggingAddon
Add a load of comumns to an existing table definition
addTableItems(PamTableDefinition) - Method in class targetMotionOld.TargetMotionSQLLogging
addTargetConfiguration(TargetConfiguration) - Method in class likelihoodDetectionModule.TreeTableModel
Adds the target configuration.
addTargetConfiguration(TargetConfiguration) - Method in class likelihoodDetectionModule.TreeTableModelAdapter
Adds the target configuration.
addTask(OfflineTask) - Method in class offlineProcessing.OfflineTaskGroup
addTip(PamTip) - Method in class tipOfTheDay.TipOfTheDayManager
addTipRandom(PamTip) - Method in class tipOfTheDay.TipOfTheDayManager
addToSpecialDatablock(PamDataBlock) - Method in class pamScrollSystem.AbstractScrollManager
Add a data block to the special data block list.
addToSpectrum() - Method in class clickDetector.ClickSpectrumTemplateEditDialog
Save the average event data to a ClickTemplate class and add to list of click templates.
addTrackedGroup(String) - Method in class difar.DifarParameters
addTreeModelListener(TreeModelListener) - Method in class likelihoodDetectionModule.TreeTableModel
Adds a listener for TreeModel events.
addTriggerParams(DifarParameters.DifarTriggerParams) - Method in class difar.DifarParameters
Add a new trigger Parameters to the list.
addUpdateUnit(PamDataUnit) - Method in class PamguardMVC.SaveRequirements
Add an update unit
addUserDisplay(UserDisplayProvider, DisplayProviderParameters) - Method in class userDisplay.UserDisplayTabPanelControl
Ad a display generated by a different module
addUserDisplayProvider(UserDisplayProvider) - Static method in class userDisplay.UserDisplayControl
Add a reference to the list of providers of user displays.
addVeto(AngleVeto) - Method in class angleVetoes.AngleVetoParameters
Add a veto to the list.
addView(PamViewInterface) - Method in class PamController.PamController
addView(PamViewInterface) - Method in interface PamController.PamControllerInterface
Adds a new view to the system
addView(PamViewInterface) - Method in class PamView.GuiFrameManager
addWhistle(ShapeDataUnit) - Method in class whistleDetector.EventDataUnit
addXMLParameter(Document, Element, double, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new floating point XML element.
addXMLParameter(Document, Element, int, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new integer point XML element.
addXMLParameter(Document, Element, String, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new floating point XML element.
addXMLParameter(Document, Element, boolean, String, String, int, int) - Static method in class PamController.PamControlledUnit
Add a new boolean point XML element.
addZoomables() - Method in class dataPlots.mouse.PlotZoomerAdapter
Clear any existing zoomables and add new zoomables to each plot panel.
AFTER_LAST - Static variable in class dataMap.OfflineDataMap
afterLast() - Method in class generalDatabase.pamCursor.NonScrollablePamCursor
afterLast() - Method in class generalDatabase.pamCursor.PamCursor
afterLast() - Method in class generalDatabase.pamCursor.ScrollablePamCursor
AirgunControl - Class in AirgunDisplay
AirgunControl(String) - Constructor for class AirgunDisplay.AirgunControl
AirgunDataUnit - Class in AirgunDisplay
AirgunDataUnit(long, GpsData) - Constructor for class AirgunDisplay.AirgunDataUnit
AirgunDimensionsDrawing - Class in AirgunDisplay
AirgunDimensionsDrawing() - Constructor for class AirgunDisplay.AirgunDimensionsDrawing
AirgunDisplay - package AirgunDisplay
AirgunGraphics - Class in AirgunDisplay
AirgunGraphics(AirgunControl) - Constructor for class AirgunDisplay.AirgunGraphics
AirgunParameters - Class in AirgunDisplay
AirgunParameters() - Constructor for class AirgunDisplay.AirgunParameters
AirgunParametersDialog - Class in AirgunDisplay
AirgunParametersDialog(Frame) - Constructor for class AirgunDisplay.AirgunParametersDialog
AirgunProcess - Class in AirgunDisplay
AirgunProcess(AirgunControl) - Constructor for class AirgunDisplay.AirgunProcess
AIS - package AIS
AISBinaryDataSource - Class in AIS
AISBinaryDataSource(AISControl, AISDataBlock) - Constructor for class AIS.AISBinaryDataSource
AISControl - Class in AIS
AISControl(String) - Constructor for class AIS.AISControl
AISDataBlock - Class in AIS
AISDataBlock(AISControl, PamProcess) - Constructor for class AIS.AISDataBlock
AISDataSet - Interface in NMEA
A set of AIS data strings which can combined with simulated NMEA data for testing purposes.
AISDataUnit - Class in AIS
AISDataUnit(long) - Constructor for class AIS.AISDataUnit
Constructor used in data collection - doesn't do much
AISDataUnit(long, String, int) - Constructor for class AIS.AISDataUnit
Constructor used when reading back from binary files.
AISDisplayDialog - Class in AIS
AISGraphics - Class in AIS
AISGraphics(AISControl, AISDataBlock) - Constructor for class AIS.AISGraphics
AISLocalisation - Class in AIS
AISLocalisation(AISDataUnit) - Constructor for class AIS.AISLocalisation
AISLogger - Class in AIS
AISLogger(AISDataBlock, ProcessAISData) - Constructor for class AIS.AISLogger
AISParameters - Class in AIS
AISParameters() - Constructor for class AIS.AISParameters
AISPositionReport - Class in AIS
AIS Position report data
AISPositionReport(long, int, double, double, double, double, double, double) - Constructor for class AIS.AISPositionReport
Constructor to use when reading back from database.
AISReport - Class in AIS
AISReport() - Constructor for class AIS.AISReport
AISSettingsDialog - Class in AIS
AISStaticData - Class in AIS
AISStaticData(String, String, int, long, double, String) - Constructor for class AIS.AISStaticData
Constructor for use when reading back from database.
AISStringsTable - Class in AIS
alarm - package alarm
alarm.actions - package alarm.actions
alarm.actions.serial - package alarm.actions.serial
alarm.actions.sound - package alarm.actions.sound
ALARM_CAN_DO - Static variable in class alarm.actions.AlarmAction
ALARM_CANT_DO - Static variable in class alarm.actions.AlarmAction
ALARM_DONT_KNOW - Static variable in class alarm.actions.AlarmAction
AlarmAction - Class in alarm.actions
AlarmAction(AlarmControl) - Constructor for class alarm.actions.AlarmAction
alarmColours - Static variable in class alarm.AlarmParameters
AlarmControl - Class in alarm
AlarmControl(String) - Constructor for class alarm.AlarmControl
AlarmCounter - Class in alarm
AlarmCounter(AlarmControl) - Constructor for class alarm.AlarmCounter
AlarmCounterProvider - Class in alarm
AlarmCounterProvider() - Constructor for class alarm.AlarmCounterProvider
AlarmDataBlock - Class in alarm
AlarmDataBlock(AlarmProcess, String) - Constructor for class alarm.AlarmDataBlock
AlarmDataPoint - Class in alarm
AlarmDataPoint(long, double) - Constructor for class alarm.AlarmDataPoint
AlarmDataSource - Interface in alarm
AlarmDataUnit - Class in alarm
AlarmDataUnit(long) - Constructor for class alarm.AlarmDataUnit
AlarmDecibelCounter - Class in alarm
BAse class for any alarm data source which is returning some kind of data measured in dB, which needs to be added in a different way to normal.
AlarmDecibelCounter(AlarmControl) - Constructor for class alarm.AlarmDecibelCounter
AlarmDialog - Class in alarm
AlarmDisplayTable - Class in alarm
AlarmDisplayTable(AlarmControl) - Constructor for class alarm.AlarmDisplayTable
AlarmLogging - Class in alarm
AlarmOfflineTask - Class in alarm
AlarmOfflineTask(AlarmControl) - Constructor for class alarm.AlarmOfflineTask
AlarmParameters - Class in alarm
AlarmParameters() - Constructor for class alarm.AlarmParameters
AlarmProcess - Class in alarm
AlarmProcess(AlarmControl) - Constructor for class alarm.AlarmProcess
alarmRange - Variable in class staticLocaliser.StaticLocaliserParams
Min range for alarm system.
AlarmSerialAction - Class in alarm.actions.serial
Alarm action for serial port output.
AlarmSerialAction(AlarmControl) - Constructor for class alarm.actions.serial.AlarmSerialAction
AlarmSerialDialog - Class in alarm.actions.serial
AlarmSerialInterface - Class in alarm.actions.serial
Singleton class for all alarm actions to share a single serial port, it's settings etc.
AlarmSerialSettings - Class in alarm.actions.serial
AlarmSerialSettings() - Constructor for class alarm.actions.serial.AlarmSerialSettings
AlarmSidePanel - Class in alarm
AlarmSidePanel(AlarmControl) - Constructor for class alarm.AlarmSidePanel
alarmTxtAlert(ClickAlarm) - Method in class clickDetector.ClickSidePanel.SidePanel
Changes the label below the 'test alarm' button to indicate which, if any, alarm is currently sounding.
ALGORITHM_SELECTION_CHANGED - Static variable in class targetMotionModule.TargetMotionControl
a selected algorithm has been changed.
algorithmType - Variable in class staticLocaliser.panels.HyperbolicLocParams
Define what type of algorithm to use- 3D localisation, 2D localisation or linear
ALL_CHANNELS - Static variable in class clipgenerator.ClipGenSetting
ALL_CHANNELS - Static variable in class difar.DifarParameters.DifarTriggerParams
include all channels in the clip
allAvailable - Variable in class Map.MapDetectionData
allocateComplexArray(int) - Static method in class fftManager.Complex
Allocate a new complex array in which each element has been created and it's contents set to 0 +i0;
allocateComplexArray(int, int) - Static method in class fftManager.Complex
alwaysClassify - Variable in class whistleClassifier.WhistleClassificationParameters
classify anyway, even if not enough fragments when quitting due to low whistle numbers.
AMBIG - Static variable in class rocca.RoccaClassifier
AMBIG - Static variable in class rocca.RoccaRFModel
amlitudeMinVal - Variable in class clipgenerator.clipDisplay.ClipDisplayParameters
AmmcDemux - Class in difar.demux
Experimental java based demultiplexer.
AmmcDemux() - Constructor for class difar.demux.AmmcDemux
AmpControl - Class in amplifier
AmpControl(String) - Constructor for class amplifier.AmpControl
AmpDialog - Class in amplifier
AmplifiedDataBlock - Class in amplifier
AmplifiedDataBlock(String, PamProcess, int, float) - Constructor for class amplifier.AmplifiedDataBlock
AmplifiedDataBlock(String, PamProcess, int, float, boolean) - Constructor for class amplifier.AmplifiedDataBlock
amplifier - package amplifier
amplifyMeasuredAmplitudeByDB(double) - Method in class PamDetection.AcousticDataUnit
amplifyMeasuredAmplitudeByLinear(double) - Method in class PamDetection.AcousticDataUnit
AMPLITUDE - Static variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
amplitude - Variable in class simulatedAcquisition.SimObject
AMPLITUDE_SCALE_DBREMPA - Static variable in class PamDetection.AcousticDataUnit
Amplitude value is in dB relative to 1 micropascal
AMPLITUDE_SCALE_LINREFSD - Static variable in class PamDetection.AcousticDataUnit
Amplitude scale is linear relative to full scale
amplitudeLimits - Variable in class Spectrogram.SpectrogramParameters
Limits of amplitude range
amplitudeRange - Variable in class clickDetector.BTDisplayParameters
amplitudeRangeVal - Variable in class clipgenerator.clipDisplay.ClipDisplayParameters
amplitudeScaledLineLength - Variable in class difar.DifarParameters
Auto scale line length depending on range
amplitudeSelect - Variable in class clickDetector.BTDisplayParameters
ampMax - Variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
ampMin - Variable in class PamGraph3D.graphDisplay3D.BTAxis3DParams
AmpParameters - Class in amplifier
AmpParameters() - Constructor for class amplifier.AmpParameters
AmpProcess - Class in amplifier
AmpProcess(AmpControl) - Constructor for class amplifier.AmpProcess
analEndTime - Variable in class PamController.PamViewParameters
Analysis offline may have gone through the data multiple times.
analSelection - Variable in class clickDetector.offlineFuncs.OfflineParameters
analStartTime - Variable in class PamController.PamViewParameters
Analysis offline may have gone through the data multiple times.
ANALYSE_ALLDATA - Static variable in class clickDetector.offlineFuncs.OfflineParameters
ANALYSE_DATA - Static variable in class whistleClassifier.WhistleClassificationParameters
Analyse new data using existing settings.
ANALYSE_LOADEDDATA - Static variable in class clickDetector.offlineFuncs.OfflineParameters
AnalyseMCMCResults(ArrayList<Point3f>, ArrayList<Double>, int) - Method in class Localiser.timeDelayLocalisers.MCMC
Take an ArrayList of the Markov chain jumps and chi-squared values of each jump and calculate source position.
analyzeOfflineClicks(OfflineEventDataUnit) - Method in class rocca.RoccaControl
anchor - Variable in class PamView.CornerLayoutContraint
ang() - Method in class fftManager.Complex
Gets the angle of a complex number
angle(PamVector) - Method in class pamMaths.PamVector
Calculate the angle between two vectors
ANGLE_RE_ARRAY - Static variable in class Array.HydrophoneLocator
ANGLE_RE_NORTH - Static variable in class Array.HydrophoneLocator
ANGLE_RE_SHIP - Static variable in class Array.HydrophoneLocator
ANGLE_TAB - Static variable in class videoRangePanel.panels.VRParametersDialog
AngleCalibration - Class in angleMeasurement
Class to sort out angle calibration data.
AngleCalibration(double[], double[]) - Constructor for class angleMeasurement.AngleCalibration
AngleCalibrationDialog - Class in angleMeasurement
AngleControl - Class in angleMeasurement
AngleControl(String) - Constructor for class angleMeasurement.AngleControl
angleCorrection - Variable in class videoRangePanel.VRMeasurement
difference between image bearing and bearing to animal
AngleDataBlock - Class in angleMeasurement
AngleDataBlock(AngleControl, String, PamProcess) - Constructor for class angleMeasurement.AngleDataBlock
angleDataBlock - Variable in class videoRangePanel.VRParameters
angleDataSource - Variable in class beakedWhaleProtocol.BeakedParameters
AngleDataUnit - Class in angleMeasurement
Data unit for storing angular information, often used to store data from imu intruments (inertial measurement unit) and heading data from compass sensors.
AngleDataUnit(long, double, double, double) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for heading data: Primarily used in AngleMeasurment module
AngleDataUnit(long, Double[]) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for IMU angle data.
AngleDataUnit(long, Double[], Double[]) - Constructor for class angleMeasurement.AngleDataUnit
Constructor for IMU angle data.
AngleListener - Class in videoRangePanel.externalSensors
AngleListener(VRControl) - Constructor for class videoRangePanel.externalSensors.AngleListener
AngleLogging - Class in angleMeasurement
AngleLogging(AngleControl, PamDataBlock) - Constructor for class angleMeasurement.AngleLogging
AngleLoggingDialogPanel - Class in angleMeasurement
AngleLoggingDialogPanel() - Constructor for class angleMeasurement.AngleLoggingDialogPanel
AngleLoggingParameters - Class in angleMeasurement
AngleLoggingParameters() - Constructor for class angleMeasurement.AngleLoggingParameters
angleMeasurement - package angleMeasurement
AngleMeasurement - Class in angleMeasurement
AngleMeasurement(String) - Constructor for class angleMeasurement.AngleMeasurement
AngleMeasurementListener - Interface in angleMeasurement
angleOffset - Variable in class angleMeasurement.AngleParameters
AngleParameters - Class in angleMeasurement
AngleParameters() - Constructor for class angleMeasurement.AngleParameters
AngleProcess - Class in angleMeasurement
AngleProcess(AngleControl) - Constructor for class angleMeasurement.AngleProcess
AngleSidePanel - Class in angleMeasurement
AngleSidePanel(AngleControl) - Constructor for class angleMeasurement.AngleSidePanel
angleUpdateInterval - Variable in class beakedWhaleProtocol.BeakedParameters
AngleVeto - Class in angleVetoes
Data for a single angle veto.
AngleVeto() - Constructor for class angleVetoes.AngleVeto
AngleVeto(int, double, double) - Constructor for class angleVetoes.AngleVeto
AngleVetoDialog - Class in angleVetoes
Dialog to get data for a single angle veto.
AngleVetoDisplay - Class in angleVetoes
Dispaly for angle veto.
AngleVetoDisplay(AngleVetoes) - Constructor for class angleVetoes.AngleVetoDisplay
angleVetoes - package angleVetoes
AngleVetoes - Class in angleVetoes
Class to support functions to handle vetoes on angles to clicks
AngleVetoes(PamControlledUnit) - Constructor for class angleVetoes.AngleVetoes
AngleVetoesDialog - Class in angleVetoes
Dialog to manage multiple angle vetoes.
AngleVetoParameters - Class in angleVetoes
PArameters controlling angle vetoes for a particular detector.
AngleVetoParameters() - Constructor for class angleVetoes.AngleVetoParameters
animalCol - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
animalMark - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
animalMarker - Static variable in class videoRangePanel.panels.VRPanel
animalMarker - Static variable in class videoRangePanel.vrmethods.VRLandMarkMethod
animalPoint - Variable in class videoRangePanel.VRMeasurement
Animal point on the image
animalSymbol - Static variable in class videoRangePanel.panels.VRPanel
annotateDataBlock(Window, PamDataBlock) - Method in class annotation.tasks.AnnotationManager
annotation - package annotation
annotation.calcs.snr - package annotation.calcs.snr
annotation.string - package annotation.string
annotation.tasks - package annotation.tasks
AnnotationDialogPanel - Interface in annotation
General interface for dialog panels which get incorporated into other dialog panels for editing one or more annotations of a data unit.
AnnotationManager - Class in annotation.tasks
AnnotationManager() - Constructor for class annotation.tasks.AnnotationManager
annotationMark - package annotationMark
annotationMark.spectrogram - package annotationMark.spectrogram
AnnotationOfflineTask - Class in annotation.tasks
AnnotationOfflineTask(PamDataBlock, DataAnnotationType) - Constructor for class annotation.tasks.AnnotationOfflineTask
AnnotationsPopup - Class in PamView
AnnotationsPopup(Window, Point, PamDataBlock) - Constructor for class PamView.AnnotationsPopup
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.AbstractPamScroller
Another managed scroller moved it's position
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.PamScroller
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.PamScrollSlider
anotherScrollerMovedInner(long) - Method in class pamScrollSystem.ScrollPaneAddon
anotherScrollerMovedOuter(long, long) - Method in class pamScrollSystem.AbstractPamScroller
Another managed scroller moved its outer position - will cause new data to be loaded.
ANSIStandard - Class in Filters
ANSIStandard() - Constructor for class Filters.ANSIStandard
append(double[][]) - Method in class wavFiles.WavFile
Append to an audio file.
appendDelays - Variable in class staticLocaliser.StaticLocaliserParams
append time delays to file if true.
appendStringToOutputField(String) - Method in class UserInput.UserInputPanel
appendStringToOutputField(long, String) - Method in class UserInput.UserInputPanel
appendZoomMenuItems(Container) - Method in class PamView.zoomer.Zoomer
Add menu items associated with zooming into a pre-existing menu.
apply_cal(float[]) - Method in class d3.calibration.CalibrationInfo
Apply this calibration to an aarry of data.
apply_cal(float[], Double, Double) - Method in class d3.calibration.CalibrationInfo
Apply this calibration to an array of data.
applyHanningWindow(double[]) - Method in class clickDetector.ClickDetection
apply a Hanning window to the passed dataset.
applyMask(Complex[], double[]) - Static method in class PamUtils.MatrixOps
applyMask(double[], double[]) - Static method in class PamUtils.MatrixOps
applyPropertyChange(PropertyChangeEvent, JLayer) - Method in class PamView.PamWaitAnimation
APPROACH_START - Static variable in class beakedWhaleProtocol.BeakedExperimentData
arbPanel - Variable in class Filters.FilterDialogPanel
arbTableModel - Variable in class Filters.FilterDialogPanel
areConfigurationsWithErrors() - Method in class likelihoodDetectionModule.LikelihoodDetectionParameters
Are configurations with errors scans the TargetConfigurations that are currently configured and returns a boolean value indicating whether any of them have erroneous values or are inconsistent with current acquisition (audio data source) settings.
areFieldsSet() - Method in class rocca.RoccaClassifier
areSampleSettingsOk(int, float) - Method in class Acquisition.DaqSystem
areSampleSettingsOk(int, float) - Method in class asiojni.ASIOSoundSystem
arrangeWindows() - Method in class clickDetector.ClickTabPanel
Array - package Array
Array.importHydrophoneData - package Array.importHydrophoneData
Array.streamerOrigin - package Array.streamerOrigin
ARRAY_MANAGER - Static variable in class videoRangePanel.LocationManager
Goes through the array manager and determines a location of the 'boat'.
ARRAY_TYPE_LINE - Static variable in class Array.ArrayManager
Line array of two or more elements
ARRAY_TYPE_NONE - Static variable in class Array.ArrayManager
No array specified
ARRAY_TYPE_PLANE - Static variable in class Array.ArrayManager
Three or more Hydrophones all in the same plane
ARRAY_TYPE_POINT - Static variable in class Array.ArrayManager
Point array (single phone or multiple phones at same point)
ARRAY_TYPE_VOLUME - Static variable in class Array.ArrayManager
Four or more hydrophones not in the same plane.
ArrayAccelControl - Class in ArrayAccelerometer
ArrayAccelControl(String) - Constructor for class ArrayAccelerometer.ArrayAccelControl
ArrayAccelDataBlock - Class in ArrayAccelerometer
ArrayAccelDataBlock(String, ArrayAccelProcess) - Constructor for class ArrayAccelerometer.ArrayAccelDataBlock
ArrayAccelDataUnit - Class in ArrayAccelerometer
ArrayAccelDataUnit(long, Double[], Double[]) - Constructor for class ArrayAccelerometer.ArrayAccelDataUnit
ArrayAccelDialog - Class in ArrayAccelerometer
ArrayAccelerometer - package ArrayAccelerometer
ArrayAccelLogging - Class in ArrayAccelerometer
ArrayAccelLogging(ArrayAccelControl, PamDataBlock) - Constructor for class ArrayAccelerometer.ArrayAccelLogging
ArrayAccelPanel - Class in ArrayAccelerometer
ArrayAccelPanel(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelPanel
ArrayAccelParams - Class in ArrayAccelerometer
ArrayAccelParams() - Constructor for class ArrayAccelerometer.ArrayAccelParams
ArrayAccelProcess - Class in ArrayAccelerometer
ArrayAccelProcess(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelProcess
ArrayAccelSidePanel - Class in ArrayAccelerometer
ArrayAccelSidePanel(ArrayAccelControl) - Constructor for class ArrayAccelerometer.ArrayAccelSidePanel
arrayDeserialized() - Method in class Array.PamArray
called just after the array settings have been loaded so that data can be loaded back into the Hydrophone localisers.
ArrayDialog - Class in Array
Main dialog for hydrophone array configuration
ArrayDump - Class in PamUtils
ArrayDump() - Constructor for class PamUtils.ArrayDump
ArrayListMath - Class in PamUtils
ArrayListMath() - Constructor for class PamUtils.ArrayListMath
ArrayManager - Class in Array
Manager for different array configurations.
ArrayReferenceSystem - Class in PamController.masterReference
ArrayReferenceSystem() - Constructor for class PamController.masterReference.ArrayReferenceSystem
arrayToMatrix(PamVector[]) - Static method in class pamMaths.PamVector
convert a series of vectors into a Matrix
ASCII6 - Static variable in class NMEA.NMEABitArray
Lookup table to convert from integer to 6 bit ASCII data for AIS vessel names, destinations, etc.
Ascii6Bit - Class in PamUtils
Utilities for converting data to and from an Ascii 6 bit format.
Ascii6Bit(byte[]) - Constructor for class PamUtils.Ascii6Bit
Ascii6Bit(String, int) - Constructor for class PamUtils.Ascii6Bit
asioController - Variable in class asiojni.AsioJniInterface
AsioDriverInfo - Class in asiojni
AsioDriverInfos - Class in asiojni
asioDriverInfos - Variable in class asiojni.AsioJniInterface
asioDriverSettings - Variable in class asiojni.AsioJniInterface
ASIOFilePlaybackSystem - Class in asiojni
ASIOFilePlaybackSystem(FilePlayback) - Constructor for class asiojni.ASIOFilePlaybackSystem
asiojni - package asiojni
asioJniInterface - Variable in class asiojni.AsioDriverInfos
AsioJniInterface - Class in asiojni
AsioJniInterface(ASIOSoundSystem) - Constructor for class asiojni.AsioJniInterface
AsioJniInterface.AsioController - Class in asiojni
AsioJniInterface.AsioController() - Constructor for class asiojni.AsioJniInterface.AsioController
AsioJniInterface.AsioDriverSettings - Class in asiojni
ASIOPlaybackDialogComponent - Class in soundPlayback
This currently doens't seem to need to do anything.
ASIOPlaybackDialogComponent(ASIOSoundSystem, ASIOPlaybackSystem) - Constructor for class soundPlayback.ASIOPlaybackDialogComponent
ASIOPlaybackSystem - Class in asiojni
ASIOPlaybackSystem(ASIOSoundSystem) - Constructor for class asiojni.ASIOPlaybackSystem
ASIOSoundSystem - Class in asiojni
Everything and everything to do with controlling and reading ASIO sound cards.
ASIOSoundSystem(AcquisitionControl) - Constructor for class asiojni.ASIOSoundSystem
asioStart() - Method in class asiojni.AsioJniInterface.AsioController
asioStop() - Method in class asiojni.AsioJniInterface.AsioController
assign(Complex) - Method in class fftManager.Complex
Assign new real and imaginary values to an existing Complex number
assign(double, double) - Method in class fftManager.Complex
Assign new real and imaginary values to an existing Complex number
assign(FilterParams) - Method in class Filters.FilterParams
assign(Coordinate3d) - Method in class PamUtils.Coordinate3d
assign(MapContourValues) - Method in class PamUtils.MapContourValues
associatedSignalBandIdentifier - Variable in class likelihoodDetectionModule.GuardBand
The identifier of the signal band that this guard band should be associated with.
AttTest - Class in rocca
Generates a little ARFF file with different attribute types.
AttTest() - Constructor for class rocca.AttTest
AudioFileFuncs - Class in Acquisition
AudioFileFuncs() - Constructor for class Acquisition.AudioFileFuncs
AutecDataBlock - Class in autecPhones
AutecDataBlock(PamProcess) - Constructor for class autecPhones.AutecDataBlock
AutecDataUnit - Class in autecPhones
AutecDataUnit(int, double, double, double, boolean) - Constructor for class autecPhones.AutecDataUnit
AutecDataUnit(double, double) - Constructor for class autecPhones.AutecDataUnit
AutecGraphics - Class in autecPhones
AutecGraphics() - Constructor for class autecPhones.AutecGraphics
autecPhones - package autecPhones
AutecPhonesControl - Class in autecPhones
AutecPhonesControl(String) - Constructor for class autecPhones.AutecPhonesControl
AUTO_UPDATE_CANT - Static variable in class loggerForms.controls.LoggerControl
AUTO_UPDATE_FAIL - Static variable in class loggerForms.controls.LoggerControl
AUTO_UPDATE_SUCCESS - Static variable in class loggerForms.controls.LoggerControl
AutoAlertPanel - Class in loggerForms.formdesign.propertypanels
AutoAlertPanel(FormEditor, PropertyTypes) - Constructor for class loggerForms.formdesign.propertypanels.AutoAlertPanel
autoAnnotate(PamDataUnit) - Method in class annotation.calcs.snr.SNRAnnotationType
autoAnnotate(PamDataUnit) - Method in class annotation.DataAnnotationType
Automatically annotate the data unit with this annotation.
AUTOCOMPLETE - Static variable in class beakedWhaleProtocol.BeakedExperimentData
autoHide() - Method in class dataMap.DataStreamPanel
autoNewFiles - Variable in class binaryFileStorage.BinaryStoreSettings
autoProcess - Variable in class difar.DifarParameters
whether to autoprocess vessel clips(now the only ones that can be)
autoSaveAngleOnly - Variable in class difar.DifarParameters
when auto saving the difar result either the angle can be saved or the angle and range can be saved if it has range
autoSaveDResult - Variable in class difar.DifarParameters
autoSaveTime - Variable in class difar.DifarParameters
time afterwhich item has been sitting in difargram to autosave if no user interaction
autoScale - Variable in class dataPlots.layout.GraphParameters
autoScale - Variable in class dbht.DbHtDisplayParams
autoScale - Variable in class noiseMonitor.NoiseDisplaySettings
autoScale - Variable in class noiseOneBand.OneBandDisplayParams
autoScaleWaveform - Variable in class Spectrogram.SpectrogramParameters
autoSetDataBlockMixMode() - Method in class PamguardMVC.PamDataBlock
autoUpdate() - Method in class loggerForms.controls.LatLongControl
autoUpdate() - Method in class loggerForms.controls.LatLongTimeControl
autoUpdate() - Method in class loggerForms.controls.LoggerControl
Automatically update a control.
autoUpdate() - Method in class loggerForms.controls.NMEAControl
autoUpdate() - Method in class loggerForms.controls.TimeControl
autoUpdate() - Method in class loggerForms.controls.TimestampControl
average() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
Returns the processed average data.
averageChains(ArrayList<MCMCTDResults>) - Method in class Localiser.timeDelayLocalisers.MCMC
AveragedSpectraDataUnit - Class in likelihoodDetectionModule.linearAverageSpectra
This is the data type produced by the linearAverageSpectra
AveragedSpectraDataUnit(long, int, long, long) - Constructor for class likelihoodDetectionModule.linearAverageSpectra.AveragedSpectraDataUnit
averageReady() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
averageStartSample() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
AverageSubtraction - Class in spectrogramNoiseReduction.averageSubtraction
AverageSubtraction() - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtraction
AverageSubtractionDialogBits - Class in spectrogramNoiseReduction.averageSubtraction
AverageSubtractionDialogBits(AverageSubtraction) - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtractionDialogBits
AverageSubtractionParameters - Class in spectrogramNoiseReduction.averageSubtraction
AverageSubtractionParameters() - Constructor for class spectrogramNoiseReduction.averageSubtraction.AverageSubtractionParameters
averageTimestamp() - Method in class likelihoodDetectionModule.linearAverageSpectra.RealBlockAverage
AWTScheduler - Class in PamController
Class to schedule SwingWorker tasks so that they execute one at a time.
AXIS_SIZE - Static variable in class rocca.RoccaSpecPopUp
axisVis - Variable in class PamGraph3D.PamPanel3D
AxisVisualisation - Class in PamGraph3D
AxisVisualisation(Frame) - Constructor for class PamGraph3D.AxisVisualisation